Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BOECMEOO_11 | 189696 | 190400 | WalR | 2.34e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| BOECMEOO_22 | 334913 | 335107 | CspR | 1.77e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| BOECMEOO_22 | 334913 | 335110 | CspA | 2.72e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BOECMEOO_15 | 7896 | 8831 | rep28 | 936 / 936 | 100.00 | CP005948 |
| BOECMEOO_30 | 241 | 1194 | repUS64 | 954 / 954 | 97.59 | JN601038 |
| BOECMEOO_23 | 1990 | 3090 | repUS73 | 1101 / 1101 | 95.46 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BOECMEOO_1 | 0.0 | 1.0 | 0.0 |
| BOECMEOO_2 | 0.0 | 1.0 | 0.0 |
| BOECMEOO_3 | 0.0 | 1.0 | 0.0 |
| BOECMEOO_4 | 0.0 | 1.0 | 0.0 |
| BOECMEOO_5 | 0.0 | 1.0 | 0.0 |
| BOECMEOO_6 | 0.0 | 1.0 | 0.0 |
| BOECMEOO_7 | 0.0 | 1.0 | 0.0 |
| BOECMEOO_8 | 0.0 | 1.0 | 0.0 |
| BOECMEOO_9 | 0.0 | 1.0 | 0.0 |
| BOECMEOO_10 | 0.0 | 1.0 | 0.0 |
| BOECMEOO_11 | 0.0 | 1.0 | 0.0 |
| BOECMEOO_12 | 1.0 | 0.0 | 1.0 |
| BOECMEOO_13 | 1.0 | 0.0 | 1.0 |
| BOECMEOO_14 | 1.0 | 0.0 | 1.0 |
| BOECMEOO_15 | 1.0 | 0.0 | 1.0 |
| BOECMEOO_16 | 1.0 | 0.0 | 1.0 |
| BOECMEOO_17 | 1.0 | 0.0 | 1.0 |
| BOECMEOO_18 | 1.0 | 0.0 | 1.0 |
| BOECMEOO_19 | 1.0 | 0.0 | 1.0 |
| BOECMEOO_20 | 1.0 | 0.0 | 1.0 |
| BOECMEOO_21 | 1.0 | 0.0 | 1.0 |
| BOECMEOO_22 | 0.0 | 1.0 | 0.0 |
| BOECMEOO_23 | 1.0 | 0.0 | 1.0 |
| BOECMEOO_24 | 1.0 | 0.0 | 1.0 |
| BOECMEOO_25 | 1.0 | 0.0 | 1.0 |
| BOECMEOO_26 | 1.0 | 0.0 | 1.0 |
| BOECMEOO_27 | 1.0 | 0.0 | 1.0 |
| BOECMEOO_28 | 0.0 | 1.0 | 0.0 |
| BOECMEOO_29 | 1.0 | 0.0 | 1.0 |
| BOECMEOO_30 | 1.0 | 0.0 | 1.0 |
| BOECMEOO_31 | 1.0 | 0.0 | 1.0 |
| BOECMEOO_33 | 0.0 | 1.0 | 0.0 |
| BOECMEOO_34 | 1.0 | 0.0 | 1.0 |
| BOECMEOO_37 | 1.0 | 0.0 | 1.0 |
| BOECMEOO_38 | 1.0 | 0.0 | 1.0 |
| BOECMEOO_43 | 0.0 | 1.0 | 0.0 |
| BOECMEOO_44 | 0.0 | 1.0 | 0.0 |
| BOECMEOO_45 | 0.0 | 1.0 | 0.0 |
| BOECMEOO_46 | 0.0 | 1.0 | 0.0 |
| BOECMEOO_47 | 0.0 | 1.0 | 0.0 |
| BOECMEOO_48 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BOECMEOO_6 | 1 | 20006 | False | Siphoviridae | VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG6154, VOG0052 |
| BOECMEOO_9 | 2353 | 29995 | False | Siphoviridae | VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG0045, VOG0198, VOG4693, VOG2591, VOG4855, VOG0186, VOG1309, VOG7298, VOG0181, VOG6495, VOG11003, VOG11077 |
Phigaro v2.4.0 (Database: Jan. 2024 release)