Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 10 | 10.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MBENJPOP_69 | 19915 | 18737 | tufA | 0.0 | elongation factor Tu | 85.75 | 99.49 | AHM69299 |
| MBENJPOP_61 | 27075 | 28580 | atpA | 0.0 | ATP synthase subunit alpha | 80.08 | 100.00 | ABD31377 |
| MBENJPOP_82 | 7815 | 6946 | pdxS | 1.17e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| MBENJPOP_114 | 59210 | 59986 | CodY | 1.10e-128 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| MBENJPOP_114 | 59210 | 59986 | codY | 5.27e-125 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| MBENJPOP_98 | 791 | 1360 | ClpP | 1.21e-104 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| MBENJPOP_67 | 15073 | 14387 | WalR | 6.62e-104 | transcriptional regulatory protein | 80.79 | 97.44 | EPH95667 |
| MBENJPOP_71 | 98879 | 99271 | spxA1 | 7.97e-73 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| MBENJPOP_71 | 98879 | 99271 | spx | 1.72e-67 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| MBENJPOP_83 | 17979 | 18221 | SpoVG | 8.03e-40 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| MBENJPOP_53 | 9157 | 8960 | CspA | 6.19e-30 | cold shock protein | 83.33 | 100.00 | CAA62903 |
| MBENJPOP_113 | 46788 | 46982 | CspD | 1.73e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| MBENJPOP_113 | 46788 | 46985 | CspB | 1.17e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MBENJPOP_1 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_2 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_3 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_4 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_5 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_6 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_7 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_8 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_9 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_10 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_12 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_13 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_14 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_15 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_16 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_17 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_18 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_19 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_20 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_21 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_22 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_24 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_26 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_27 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_28 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_29 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_30 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_31 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_32 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_33 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_35 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_37 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_38 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_39 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_40 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_41 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_42 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_45 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_46 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_47 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_48 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_50 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_51 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_52 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_53 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_54 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_55 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_56 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_58 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_60 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_61 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_62 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_64 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_65 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_67 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_68 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_69 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_70 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_71 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_72 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_73 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_74 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_75 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_76 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_77 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_78 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_79 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_80 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_81 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_82 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_83 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_84 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_85 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_86 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_89 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_90 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_91 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_92 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_93 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_94 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_95 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_96 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_97 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_98 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_99 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_100 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_101 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_102 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_103 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_104 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_105 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_106 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_107 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_108 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_111 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_112 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_113 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_114 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_115 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_116 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_117 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_118 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_119 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_120 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_121 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_122 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_123 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_124 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_125 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_126 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_127 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_128 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_129 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_131 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_132 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_133 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_134 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_135 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_136 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_137 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_138 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_139 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_140 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_141 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_142 | 0.0 | 1.0 | 0.0 |
| MBENJPOP_143 | 1.0 | 0.0 | 1.0 |
| MBENJPOP_144 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MBENJPOP_54 | 4925 | 36386 | False | Siphoviridae | VOG4602, VOG9667, VOG9667, VOG4552, VOG8241, VOG3549, VOG1878, VOG4600, VOG1309, VOG4855, VOG9600, VOG0025, VOG9996, VOG0397, VOG0536, VOG0195, VOG6440, VOG1298, VOG3553, VOG8445, VOG0198, VOG0611, VOG7407, VOG7708, VOG4568, VOG3210, VOG4711, VOG1581, VOG3888, VOG5660, VOG4557, VOG6163, VOG0801, VOG4619, VOG6373, VOG4660 |
| MBENJPOP_102 | 19967 | 61032 | False | Siphoviridae | VOG6778, VOG0275, VOG4602, VOG4548, VOG0982, VOG9858, VOG9667, VOG11075, VOG6495, VOG0181, VOG1878, VOG4690, VOG8647, VOG0226, VOG4552, VOG0198, VOG0275, VOG4841, VOG4581, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0704, VOG4586, VOG5852, VOG6163, VOG0801, VOG3462, VOG8438, VOG6243, VOG8580, VOG0753, VOG0136, VOG4918 |
Phigaro v2.4.0 (Database: Jan. 2024 release)