Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DELLPDMP_1 | 1666008 | 1665307 | WalR | 3.29e-107 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DELLPDMP_5 | 12970 | 14070 | repUS73 | 1101 / 1101 | 95.82 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DELLPDMP_1 | 0.0 | 1.0 | 0.0 |
| DELLPDMP_2 | 1.0 | 0.0 | 1.0 |
| DELLPDMP_3 | 1.0 | 0.0 | 1.0 |
| DELLPDMP_4 | 1.0 | 0.0 | 1.0 |
| DELLPDMP_5 | 1.0 | 0.0 | 1.0 |
| DELLPDMP_6 | 1.0 | 0.0 | 1.0 |
| DELLPDMP_7 | 1.0 | 0.0 | 1.0 |
| DELLPDMP_8 | 1.0 | 0.0 | 1.0 |
| DELLPDMP_9 | 1.0 | 0.0 | 1.0 |
| DELLPDMP_10 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DELLPDMP_1 | 498825 | 523549 | False | Myoviridae | VOG0870, VOG4845, VOG4691, VOG2349, VOG0573, VOG1348, VOG1433, VOG4865, VOG4910, VOG4699, VOG1352, VOG1883, VOG1353, VOG8133, VOG1329, VOG7118, VOG4564, VOG0720, VOG7407, VOG0611 |
| DELLPDMP_1 | 527676 | 534853 | False | Unknown | VOG6005, VOG4693, VOG7236, VOG4566, VOG0186, VOG1309, VOG9706, VOG0655, VOG9667 |
| DELLPDMP_1 | 973548 | 1000049 | False | Myoviridae | VOG0703, VOG5087, VOG0861, VOG7896, VOG6540, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG6163, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4778, VOG1942, VOG2779, VOG1915, VOG4564, VOG1912, VOG10227, VOG0796 |
| DELLPDMP_6 | 4486 | 13535 | False | Siphoviridae | VOG1353, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796 |
| DELLPDMP_6 | 16600 | 20362 | False | Unknown | VOG4567, VOG0052, VOG0189, VOG8647 |
Phigaro v2.4.0 (Database: Jan. 2024 release)