Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 9 | 0 | 0 | 9.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GCFGBACC_3 | 85597 | 87543 | tet(Q) | ARO:3000191 | tet(Q) | 97.81 | 98.63 | Z21523.1 |
| GCFGBACC_46 | 21066 | 21968 | CepA-44 | ARO:3006225 | CepA-44 | 99.33 | 100.00 | NG_050386.1 |
| GCFGBACC_22 | 3083 | 4204 | tet(X) | ARO:3000205 | tet(X) | 99.46 | 96.13 | M37699.1 |
| GCFGBACC_22 | 2116 | 2907 | aadS | ARO:3004683 | aadS | 100.00 | 91.64 | M72415.1 |
| GCFGBACC_29 | 320 | 1120 | ErmF | ARO:3000498 | ErmF | 97.37 | 100.00 | M17124.1 |
| GCFGBACC_26 | 164 | 676 | nimE | ARO:3007107 | nimE | 98.24 | 100.00 | CP036548.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GCFGBACC_46 | 21066 | 21968 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | U05887 |
| GCFGBACC_38 | 1 | 625 | sul2 | Sulfamethoxazole | 99.84 | 76.59 | AJ830710 |
| GCFGBACC_29 | 320 | 1120 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.75 | 100.00 | M62487 |
| GCFGBACC_26 | 164 | 676 | nimE | Metronidazole | 99.42 | 100.00 | AM042593 |
| GCFGBACC_3 | 85597 | 87509 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.75 | 99.33 | L33696 |
| GCFGBACC_10 | 66226 | 67443 | mef(A) | Erythromycin, Azithromycin | 95.16 | 100.00 | AF227520 |
| GCFGBACC_22 | 1 | 788 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.8730964467005 | 67.52 | GU014535 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GCFGBACC_22 | 3086 | 4204 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 100.00 | 96.13 | WP_008651082.1 |
| GCFGBACC_22 | 2122 | 2907 | aadS | aminoglycoside 6-adenylyltransferase AadS | BLASTX | 100.00 | 91.29 | WP_003013318.1 |
| GCFGBACC_46 | 21069 | 21968 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_005816369.1 |
| GCFGBACC_38 | 2 | 622 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | PARTIAL_CONTIG_ENDX | 99.52 | 76.38 | WP_001043260.1 |
| GCFGBACC_29 | 320 | 1117 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.25 | 100.00 | WP_063844771.1 |
| GCFGBACC_22 | 952 | 1791 | estT | macrolide hydrolase EstT | BLASTX | 98.94 | 100.00 | WP_185148407.1 |
| GCFGBACC_10 | 66229 | 67443 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 98.77 | 99.26 | WP_012102963.1 |
| GCFGBACC_26 | 164 | 673 | nimE | 5-nitroimidazole reductase NimE | BLASTX | 98.24 | 100.00 | WP_005812773.1 |
| GCFGBACC_3 | 85597 | 87510 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.96 | 99.53 | WP_063856407.1 |
| GCFGBACC_22 | 3 | 788 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | PARTIAL_CONTIG_ENDX | 100.00 | 67.53 | WP_008651082.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GCFGBACC_1 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_2 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_3 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_4 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_5 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_6 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_7 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_8 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_9 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_10 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_11 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_12 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_13 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_14 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_15 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_16 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_17 | 1.0 | 0.0 | 1.0 |
| GCFGBACC_18 | 1.0 | 0.0 | 1.0 |
| GCFGBACC_19 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_20 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_21 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_22 | 1.0 | 0.0 | 1.0 |
| GCFGBACC_23 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_25 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_26 | 1.0 | 0.0 | 1.0 |
| GCFGBACC_27 | 1.0 | 0.0 | 1.0 |
| GCFGBACC_28 | 1.0 | 0.0 | 1.0 |
| GCFGBACC_29 | 1.0 | 0.0 | 1.0 |
| GCFGBACC_30 | 1.0 | 0.0 | 1.0 |
| GCFGBACC_31 | 1.0 | 0.0 | 1.0 |
| GCFGBACC_32 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_34 | 1.0 | 0.0 | 1.0 |
| GCFGBACC_36 | 1.0 | 0.0 | 1.0 |
| GCFGBACC_43 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_44 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_45 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_46 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_47 | 0.0 | 1.0 | 0.0 |
| GCFGBACC_48 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GCFGBACC_45 | 115183 | 124964 | False | Myoviridae | VOG8855, |
Phigaro v2.4.0 (Database: Jan. 2024 release)