Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JLMLBPDD_1 | 39668 | 40369 | WalR | 3.32e-107 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JLMLBPDD_4 | 5856 | 6895 | rep38 | 1051 / 1104 | 80.69 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JLMLBPDD_1 | 0.0 | 1.0 | 0.0 |
| JLMLBPDD_2 | 1.0 | 0.0 | 1.0 |
| JLMLBPDD_3 | 1.0 | 0.0 | 1.0 |
| JLMLBPDD_4 | 1.0 | 0.0 | 1.0 |
| JLMLBPDD_5 | 1.0 | 0.0 | 1.0 |
| JLMLBPDD_6 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JLMLBPDD_1 | 798848 | 833322 | False | Myoviridae | VOG1309, VOG0186, VOG4855, VOG5733, VOG7236, VOG4693, VOG6005, VOG3643, VOG4010, VOG0198, VOG0796, VOG4544, VOG2649, VOG4544, VOG10227, VOG1912, VOG4564, VOG4865, VOG1915, VOG2779, VOG1942, VOG4778, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG8263, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG7896, VOG0861, VOG5087 |
| JLMLBPDD_1 | 843995 | 860355 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG0198, VOG8908, VOG0480, VOG8990 |
| JLMLBPDD_1 | 996608 | 1048280 | False | Myoviridae | VOG4549, VOG10391, VOG0275, VOG6884, VOG6054, VOG4567, VOG0982, VOG0862, VOG8520, VOG4552, VOG3246, VOG0650, VOG6495, VOG0685, VOG0322, VOG0226, VOG4799, VOG0025, VOG0514, VOG6005, VOG7484, VOG5545, VOG0536, VOG1298, VOG4010, VOG4732, VOG7719, VOG0586, VOG0198, VOG9295, VOG0796, VOG0275, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4710, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG5706, VOG4910, VOG1956, VOG1433, VOG1348, VOG0573, VOG4691, VOG4845, VOG6540, VOG10914, VOG3298, VOG3298 |
| JLMLBPDD_5 | 2751 | 25195 | False | Siphoviridae | VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG8263, VOG4605, VOG4599, VOG10972, VOG9955, VOG4705, VOG0703 |
| JLMLBPDD_5 | 35800 | 41187 | False | Siphoviridae | VOG0283, VOG0226, VOG0514, VOG8647, VOG0189, VOG0052, VOG0822, VOG0044 |
Phigaro v2.4.0 (Database: Jan. 2024 release)