Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 0 | 7.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GMHPBIEI_33 | 376274 | 377239 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| GMHPBIEI_44 | 93700 | 95385 | tet(Q) | ARO:3000191 | tet(Q) | 96.43 | 85.39 | Z21523.1 |
| GMHPBIEI_10 | 35545 | 36447 | CepA-49 | ARO:3006226 | CepA-49 | 100.00 | 100.00 | NG_050387.1 |
| GMHPBIEI_19 | 9687 | 10892 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| GMHPBIEI_20 | 3786 | 4298 | nimE | ARO:3007107 | nimE | 100.00 | 100.00 | CP036548.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GMHPBIEI_10 | 35545 | 36447 | cepA-49 | Unknown Beta-lactam | 100.00 | 100.00 | U05886 |
| GMHPBIEI_33 | 376274 | 377239 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| GMHPBIEI_20 | 3786 | 4298 | nimE | Metronidazole | 100.00 | 100.00 | AM042593 |
| GMHPBIEI_18 | 7434 | 8232 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.63 | 99.75 | M17808 |
| GMHPBIEI_44 | 93700 | 95624 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 96.78 | 99.95 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GMHPBIEI_10 | 35548 | 36447 | cepA-49 | extended-spectrum class A beta-lactamase CepA-49 | ALLELEX | 100.00 | 100.00 | WP_008659027.1 |
| GMHPBIEI_33 | 376277 | 377239 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| GMHPBIEI_19 | 9153 | 9662 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| GMHPBIEI_20 | 3789 | 4298 | nimE | 5-nitroimidazole reductase NimE | EXACTX | 100.00 | 100.00 | WP_005812773.1 |
| GMHPBIEI_19 | 9690 | 10892 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| GMHPBIEI_44 | 93700 | 95382 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIALX | 99.47 | 87.52 | WP_063856409.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GMHPBIEI_1 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_2 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_3 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_4 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_5 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_6 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_7 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_8 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_9 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_10 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_11 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_12 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_13 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_14 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_15 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_16 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_17 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_18 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_19 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_20 | 1.0 | 0.0 | 1.0 |
| GMHPBIEI_21 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_22 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_23 | 1.0 | 0.0 | 1.0 |
| GMHPBIEI_24 | 1.0 | 0.0 | 1.0 |
| GMHPBIEI_25 | 1.0 | 0.0 | 1.0 |
| GMHPBIEI_26 | 1.0 | 0.0 | 1.0 |
| GMHPBIEI_27 | 1.0 | 0.0 | 1.0 |
| GMHPBIEI_28 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_29 | 1.0 | 0.0 | 1.0 |
| GMHPBIEI_30 | 1.0 | 0.0 | 1.0 |
| GMHPBIEI_33 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_43 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_44 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_45 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_46 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_47 | 0.0 | 1.0 | 0.0 |
| GMHPBIEI_48 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GMHPBIEI_4 | 104308 | 116475 | False | Siphoviridae | VOG6154, |
Phigaro v2.4.0 (Database: Jan. 2024 release)