Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 1 | 0 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JPGMEENA_21 | 33984 | 34946 | cepA | ARO:3003559 | cepA | 99.67 | 106.67 | U05883.1 |
| JPGMEENA_30 | 7082 | 9076 | tet(Q) | ARO:3000191 | tet(Q) | 97.09 | 101.07 | Z21523.1 |
| JPGMEENA_37 | 3706 | 4218 | nimE | ARO:3007107 | nimE | 100.00 | 100.00 | CP036548.1 |
| JPGMEENA_40 | 347 | 2272 | tet(Q) | ARO:3000191 | tet(Q) | 89.39 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JPGMEENA_37 | 3706 | 4218 | nimE | Metronidazole | 100.00 | 100.00 | AM042593 |
| JPGMEENA_21 | 33984 | 34886 | cepA | Unknown Beta-lactam | 99.78 | 100.00 | L13472 |
| JPGMEENA_30 | 7130 | 9042 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.17 | 99.33 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JPGMEENA_37 | 3709 | 4218 | nimE | 5-nitroimidazole reductase NimE | EXACTX | 100.00 | 100.00 | WP_005812773.1 |
| JPGMEENA_21 | 33987 | 34886 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_005795628.1 |
| JPGMEENA_30 | 7130 | 9043 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.81 | 99.53 | WP_004293868.1 |
| JPGMEENA_40 | 347 | 2269 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.86 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| JPGMEENA_55 | 4931 | 6124 | bft-3 | 0.0 | BFT B. fragilis toxin, subtype 3 | Exotoxin | 100.00 | 100.00 | BAA77275 |
| JPGMEENA_55 | 4931 | 6124 | bft-2 | 0.0 | BFT B. fragilis toxin, subtype 2 | Exotoxin | 96.90 | 100.00 | BAA77277 |
| JPGMEENA_55 | 4931 | 6124 | bft-1 | 0.0 | BFT B. fragilis toxin, subtype 1 | Exotoxin | 94.47 | 100.00 | BAA77276 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JPGMEENA_1 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_2 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_3 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_4 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_5 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_6 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_7 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_8 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_9 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_10 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_11 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_12 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_13 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_14 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_15 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_16 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_17 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_18 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_19 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_20 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_21 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_22 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_23 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_24 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_25 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_26 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_27 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_28 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_29 | 1.0 | 0.0 | 1.0 |
| JPGMEENA_30 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_31 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_32 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_33 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_34 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_35 | 1.0 | 0.0 | 1.0 |
| JPGMEENA_36 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_37 | 1.0 | 0.0 | 1.0 |
| JPGMEENA_38 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_39 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_40 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_41 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_42 | 1.0 | 0.0 | 1.0 |
| JPGMEENA_43 | 1.0 | 0.0 | 1.0 |
| JPGMEENA_44 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_45 | 1.0 | 0.0 | 1.0 |
| JPGMEENA_46 | 1.0 | 0.0 | 1.0 |
| JPGMEENA_48 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_49 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_50 | 1.0 | 0.0 | 1.0 |
| JPGMEENA_51 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_52 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_53 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_54 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_55 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_56 | 1.0 | 0.0 | 1.0 |
| JPGMEENA_57 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_58 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_59 | 1.0 | 0.0 | 1.0 |
| JPGMEENA_60 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_61 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_63 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_64 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_65 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_66 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_67 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_68 | 1.0 | 0.0 | 1.0 |
| JPGMEENA_77 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_88 | 0.0 | 1.0 | 0.0 |
| JPGMEENA_93 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JPGMEENA_66 | 12676 | 21432 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)