Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PNKDKHOP_21 | 80455 | 82140 | tet(Q) | ARO:3000191 | tet(Q) | 89.48 | 85.39 | Z21523.1 |
| PNKDKHOP_62 | 215 | 1180 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| PNKDKHOP_75 | 1 | 1731 | tet(Q) | ARO:3000191 | tet(Q) | 97.05 | 87.82 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PNKDKHOP_62 | 215 | 1180 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| PNKDKHOP_75 | 1 | 1683 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 87.38 | X58717 |
| PNKDKHOP_21 | 82426 | 83224 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.25 | 99.75 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PNKDKHOP_62 | 215 | 1177 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| PNKDKHOP_75 | 1 | 1683 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 100.00 | 87.52 | WP_004293868.1 |
| PNKDKHOP_21 | 80458 | 82140 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIALX | 90.20 | 87.52 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PNKDKHOP_1 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_2 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_3 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_4 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_5 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_6 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_7 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_8 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_9 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_10 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_11 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_12 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_13 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_14 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_15 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_16 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_17 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_18 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_19 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_20 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_21 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_22 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_23 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_24 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_25 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_26 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_27 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_28 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_29 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_30 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_31 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_32 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_33 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_34 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_35 | 1.0 | 0.0 | 1.0 |
| PNKDKHOP_36 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_37 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_38 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_39 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_40 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_41 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_42 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_43 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_44 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_45 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_46 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_47 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_48 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_49 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_50 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_51 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_52 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_53 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_54 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_55 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_56 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_57 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_58 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_59 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_60 | 1.0 | 0.0 | 1.0 |
| PNKDKHOP_61 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_62 | 1.0 | 0.0 | 1.0 |
| PNKDKHOP_63 | 1.0 | 0.0 | 1.0 |
| PNKDKHOP_64 | 1.0 | 0.0 | 1.0 |
| PNKDKHOP_65 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_66 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_67 | 1.0 | 0.0 | 1.0 |
| PNKDKHOP_68 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_69 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_71 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_72 | 1.0 | 0.0 | 1.0 |
| PNKDKHOP_73 | 1.0 | 0.0 | 1.0 |
| PNKDKHOP_74 | 1.0 | 0.0 | 1.0 |
| PNKDKHOP_75 | 1.0 | 0.0 | 1.0 |
| PNKDKHOP_76 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_77 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_78 | 1.0 | 0.0 | 1.0 |
| PNKDKHOP_79 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_80 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_81 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_84 | 1.0 | 0.0 | 1.0 |
| PNKDKHOP_85 | 1.0 | 0.0 | 1.0 |
| PNKDKHOP_87 | 0.0 | 1.0 | 0.0 |
| PNKDKHOP_88 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PNKDKHOP_31 | 32968 | 41733 | False | Siphoviridae | VOG9606, |
| PNKDKHOP_77 | 192425 | 199911 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)