Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GCECBNDC_130 | 17037 | 18002 | CfxA2 | ARO:3003002 | CfxA2 | 99.38 | 100.00 | AF118110.1 |
| GCECBNDC_84 | 1931 | 3856 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GCECBNDC_84 | 1931 | 3856 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| GCECBNDC_130 | 17037 | 18002 | cfxA3 | Ampicillin | 99.69 | 100.00 | AF472622 |
| GCECBNDC_130 | 17037 | 18002 | cfxA4 | Unknown Beta-lactam | 99.69 | 100.00 | AY769933 |
| GCECBNDC_130 | 17037 | 18002 | cfxA5 | Unknown Beta-lactam | 99.69 | 100.00 | AY769934 |
| GCECBNDC_130 | 17037 | 18002 | cfxA | Cefoxitin, Ampicillin | 99.69 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GCECBNDC_84 | 1931 | 3853 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| GCECBNDC_130 | 17040 | 18002 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.38 | 100.00 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GCECBNDC_54 | 9 | 539 | repUS2 | 538 / 681 | 80.11 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GCECBNDC_1 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_2 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_3 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_4 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_5 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_7 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_8 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_9 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_10 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_11 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_12 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_13 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_14 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_15 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_16 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_17 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_18 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_19 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_21 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_22 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_23 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_24 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_25 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_26 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_27 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_28 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_29 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_30 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_31 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_33 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_44 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_55 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_66 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_77 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_79 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_80 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_81 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_82 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_83 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_84 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_85 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_86 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_87 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_88 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_89 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_90 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_91 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_92 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_93 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_94 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_95 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_96 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_97 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_98 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_99 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_100 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_101 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_102 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_103 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_104 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_105 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_106 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_107 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_108 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_109 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_110 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_111 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_112 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_113 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_114 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_115 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_116 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_117 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_118 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_119 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_120 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_121 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_122 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_123 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_124 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_125 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_126 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_127 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_128 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_129 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_130 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_131 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_132 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_133 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_134 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_135 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_136 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_137 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_138 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_139 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_140 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_141 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_142 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_143 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_144 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_145 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_146 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_147 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_148 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_149 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_150 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_151 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_152 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_153 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_154 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_155 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_156 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_157 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_158 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_159 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_160 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_161 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_162 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_163 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_164 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_165 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_166 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_167 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_168 | 1.0 | 0.0 | 1.0 |
| GCECBNDC_169 | 0.0 | 1.0 | 0.0 |
| GCECBNDC_170 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GCECBNDC_79 | 10150 | 14372 | False | Unknown | VOG4551, |
| GCECBNDC_98 | 31259 | 35389 | True | Siphoviridae | VOG6282, |
Phigaro v2.4.0 (Database: Jan. 2024 release)