Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 23 | 33 | 40.22 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| PAPBEHOL_18 | 60223 | 61092 | rfbA | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681286 |
| PAPBEHOL_26 | 9312 | 10121 | STU_RS16245 | 0.0 | Capsule | Immune modulation | 99.88 | 100.00 | WP_002948020 |
| PAPBEHOL_18 | 61092 | 61685 | STER_RS06030 | 0.0 | Capsule | Immune modulation | 99.83 | 100.00 | WP_011226149 |
| PAPBEHOL_18 | 61092 | 61685 | STR_RS05880 | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | WP_011226149 |
| PAPBEHOL_38 | 12986 | 14644 | fbp54 | 0.0 | FBPs | Adherence | 99.64 | 100.00 | WP_011227179 |
| PAPBEHOL_26 | 7032 | 8087 | STU_RS16235 | 0.0 | Capsule | Immune modulation | 99.62 | 100.00 | WP_002948022 |
| PAPBEHOL_13 | 20760 | 21599 | cbpD | 0.0 | Autolysin | Exoenzyme | 99.52 | 100.00 | WP_011226733 |
| PAPBEHOL_18 | 61092 | 61685 | STU_RS15260 | 0.0 | Capsule | Immune modulation | 99.50 | 100.00 | WP_011226149 |
| PAPBEHOL_10 | 68187 | 68918 | STER_RS05315 | 0.0 | Capsule | Immune modulation | 99.32 | 100.00 | WP_011681176 |
| PAPBEHOL_26 | 8107 | 9312 | STU_RS16240 | 0.0 | Capsule | Immune modulation | 99.25 | 100.00 | WP_011226326 |
| PAPBEHOL_26 | 11058 | 12206 | STU_RS16255 | 0.0 | Capsule | Immune modulation | 99.22 | 100.00 | WP_041828290 |
| PAPBEHOL_26 | 10105 | 11061 | STU_RS16250 | 0.0 | Capsule | Immune modulation | 99.16 | 100.00 | WP_011226328 |
| PAPBEHOL_26 | 5253 | 7035 | STU_RS16230 | 0.0 | Capsule | Immune modulation | 99.10 | 99.89 | WP_011226325 |
| PAPBEHOL_10 | 68187 | 68918 | STU_RS14645 | 0.0 | Capsule | Immune modulation | 98.77 | 100.00 | WP_011226048 |
| PAPBEHOL_10 | 68187 | 68918 | STR_RS05260 | 0.0 | Capsule | Immune modulation | 98.63 | 100.00 | WP_011227248 |
| PAPBEHOL_10 | 1269 | 2062 | cshA | 0.0 | Cell surface hydrophobicity proteins | Adherence | 98.36 | 100.25 | - |
| PAPBEHOL_10 | 66726 | 68186 | STER_RS05320 | 0.0 | Capsule | Immune modulation | 98.29 | 100.00 | WP_011681177 |
| PAPBEHOL_18 | 25560 | 26321 | srtA | 0.0 | Sortase A | Exoenzyme | 97.64 | 100.00 | - |
| PAPBEHOL_10 | 68927 | 69619 | STU_RS14640 | 0.0 | Capsule | Immune modulation | 97.55 | 100.00 | WP_011226047 |
| PAPBEHOL_36 | 288072 | 288923 | rfbD | 0.0 | Capsule | Immune modulation | 97.30 | 100.00 | WP_014621820 |
| PAPBEHOL_10 | 68927 | 69619 | STR_RS05255 | 0.0 | Capsule | Immune modulation | 97.26 | 100.00 | WP_011227247 |
| PAPBEHOL_10 | 69629 | 70369 | STER_RS05305 | 0.0 | Capsule | Immune modulation | 97.03 | 100.00 | WP_011681174 |
| PAPBEHOL_10 | 69629 | 70369 | STU_RS14635 | 0.0 | Capsule | Immune modulation | 96.90 | 100.00 | WP_011226046 |
| PAPBEHOL_10 | 66726 | 68186 | STU_RS14650 | 0.0 | Capsule | Immune modulation | 96.85 | 100.21 | WP_011226049 |
| PAPBEHOL_10 | 69629 | 70364 | STR_RS05250 | 0.0 | Capsule | Immune modulation | 96.47 | 98.13 | WP_011227246 |
| PAPBEHOL_10 | 66726 | 68186 | STR_RS05265 | 0.0 | Capsule | Immune modulation | 95.89 | 100.21 | WP_041827043 |
| PAPBEHOL_10 | 70426 | 71793 | STU_RS14630 | 0.0 | Capsule | Immune modulation | 95.03 | 99.93 | WP_011226045 |
| PAPBEHOL_10 | 70426 | 71791 | STER_RS05300 | 0.0 | Capsule | Immune modulation | 94.59 | 99.78 | WP_011681173 |
| PAPBEHOL_10 | 68927 | 69619 | STER_RS05310 | 0.0 | Capsule | Immune modulation | 90.62 | 100.00 | WP_011681175 |
| PAPBEHOL_6 | 229895 | 231198 | eno | 0.0 | Streptococcal enolase | Exoenzyme | 88.10 | 99.46 | WP_000022832 |
| PAPBEHOL_21 | 14241 | 15251 | plr/gapA | 0.0 | Streptococcal plasmin receptor/GAPDH | Adherence | 87.46 | 99.80 | WP_002986042 |
| PAPBEHOL_23 | 5357 | 6640 | tig/ropA | 0.0 | Trigger factor | Stress survival | 80.73 | 99.77 | WP_000107753 |
| PAPBEHOL_18 | 62114 | 63160 | rfbB | 0.0 | Capsule | Immune modulation | 80.61 | 100.00 | WP_009659423 |
| PAPBEHOL_28 | 1270 | 1853 | SPD_RS01775 | 4.97e-149 | Capsule | Immune modulation | 83.08 | 96.20 | WP_001819836 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PAPBEHOL_18 | 22873 | 21890 | ldh(Sp_1220) | 0.0 | L-lactate dehydrogenase | 94.51 | 100.00 | AAK75326 |
| PAPBEHOL_39 | 27611 | 28684 | MntE | 0.0 | manganese homeostasis | 94.41 | 99.72 | ABF32167 |
| PAPBEHOL_36 | 117266 | 114963 | pfl2(Sp_0459) | 0.0 | formate acetyltransferase | 92.97 | 99.22 | AAK74619 |
| PAPBEHOL_6 | 147665 | 148633 | spr0084 | 0.0 | pathogenitcity related | 92.57 | 98.48 | AAK98888 |
| PAPBEHOL_15 | 47432 | 48913 | SPD_0310 | 0.0 | UPF0371 protein SPD_0310 | 92.31 | 100.00 | ABJ54480 |
| PAPBEHOL_3 | 6250 | 8496 | metE | 0.0 | methionine biosynthesis enzymes | 91.86 | 100.00 | AAK74738 |
| PAPBEHOL_13 | 40391 | 41389 | recA | 0.0 | DNA recombination and repair | 91.29 | 85.82 | AAL00560 |
| PAPBEHOL_13 | 4278 | 5249 | prsA2 | 0.0 | ribose-phosphate pyrophosphokinase | 90.12 | 100.00 | ABF36968 |
| PAPBEHOL_36 | 238475 | 239626 | potA | 0.0 | ABC transporter ATP-binding protein-spermidine/putrescine transport | 89.32 | 99.74 | AAL00050 |
| PAPBEHOL_36 | 274900 | 276888 | uvrB | 0.0 | excinuclease ABC, B subunit | 88.84 | 100.00 | AE014259_2 |
| PAPBEHOL_18 | 39072 | 40802 | ptsI | 0.0 | phosphoenolpyruvate-protein phosphotransferase | 88.39 | 100.00 | AAK34199 |
| PAPBEHOL_14 | 13994 | 15472 | IMPDH | 0.0 | inosine-5'-monophosphate dehydrogenase | 87.63 | 100.00 | ADE32434 |
| PAPBEHOL_6 | 229895 | 231196 | Eno | 0.0 | enolase | 86.21 | 99.77 | ABP90468 |
| PAPBEHOL_14 | 28731 | 30623 | gidA | 0.0 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme | 85.74 | 98.90 | ABP91129 |
| PAPBEHOL_3 | 11421 | 9712 | PGM | 0.0 | phosphoglucomutase | 84.06 | 99.65 | ACH87041 |
| PAPBEHOL_22 | 1996 | 986 | pdh | 0.0 | pyruvate dehydrogenase | 83.09 | 99.70 | ABP91006 |
| PAPBEHOL_38 | 39932 | 38571 | mnmE | 0.0 | central tRNA-modifying GTPase | 82.24 | 99.56 | ABP90420 |
| PAPBEHOL_9 | 30068 | 31960 | PepO | 0.0 | endopeptidase | 80.19 | 100.00 | ABF32980 |
| PAPBEHOL_6 | 215459 | 216349 | bglB | 2.27e-179 | putative phospho--glucosidase | 88.89 | 99.66 | AAK33487 |
| PAPBEHOL_4 | 43973 | 44911 | SP_0676 | 7.03e-169 | transcription facot | 81.15 | 97.20 | AAK74821 |
| PAPBEHOL_3 | 8688 | 9545 | metF | 2.34e-166 | methionine biosynthesis enzymes | 86.01 | 99.31 | AAK74739 |
| PAPBEHOL_10 | 29897 | 30601 | covR | 1.75e-132 | responder protein | 85.53 | 100.00 | AAK71319 |
| PAPBEHOL_15 | 28452 | 27781 | rr01 | 1.55e-125 | response regulator | 83.93 | 99.56 | CAB54566 |
| PAPBEHOL_3 | 15376 | 16044 | CiaR | 8.05e-125 | two-component response regulator | 86.10 | 99.55 | AAK74935 |
| PAPBEHOL_10 | 29897 | 30601 | walR | 7.38e-123 | DNA-binding response regulator | 82.13 | 100.00 | ANC99504 |
| PAPBEHOL_3 | 15376 | 16047 | ciaR | 1.09e-122 | two component system response regulator | 83.93 | 99.12 | AIK75708 |
| PAPBEHOL_34 | 8296 | 7610 | CovR | 1.36e-119 | serves to repress GAS virulence factor-encoding genes | 81.22 | 100.00 | ACE75886 |
| PAPBEHOL_13 | 41665 | 42039 | SpxA2 | 2.63e-71 | transcriptional regulator | 91.20 | 94.70 | ERL21461 |
| PAPBEHOL_38 | 51350 | 51751 | SpxA1 | 1.42e-67 | transcriptional regulator | 80.60 | 100.00 | ERL19273 |
| PAPBEHOL_35 | 25610 | 25323 | spr0479 | 3.01e-49 | essential gene | 86.46 | 98.97 | AAK99283 |
| PAPBEHOL_6 | 107465 | 107719 | spr1327 | 4.72e-45 | essential gene | 95.29 | 100.00 | AAL00131 |
| PAPBEHOL_19 | 22111 | 21848 | spr0175 | 1.46e-42 | pathogenitcity related | 84.09 | 100.00 | AAK98979 |
| PAPBEHOL_19 | 21284 | 21018 | spr0177 | 3.20e-34 | essential gene | 84.27 | 88.12 | AAK98981 |
| PAPBEHOL_23 | 6798 | 7298 | RopE (M5005_Spy_1611) | 2.28e-76 | probable DNA-directed RNA polymerase subunit delta | 81.44 | 87.43 | AAK34603 |
| PAPBEHOL_36 | 117266 | 114969 | PFL (B9H01_RS01125) | 0.0 | formate C-acetyltransferase | 82.94 | 98.08 | MYN69560 |
| PAPBEHOL_9 | 44527 | 45546 | ilvC (SPD_0406) | 0.0 | ketol-acid reductoisomerase (NADP(+)) | 96.47 | 100.00 | ABJ55451 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PAPBEHOL_1 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_2 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_3 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_4 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_5 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_6 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_8 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_9 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_10 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_11 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_12 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_13 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_14 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_15 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_16 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_17 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_18 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_19 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_20 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_21 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_22 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_23 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_24 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_25 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_26 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_27 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_28 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_29 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_30 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_31 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_32 | 1.0 | 0.0 | 1.0 |
| PAPBEHOL_33 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_34 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_35 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_36 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_37 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_38 | 0.0 | 1.0 | 0.0 |
| PAPBEHOL_39 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)