Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
HNNMPMNJ_7246465245761WalR1.70e-114transcriptional regulatory protein84.25100.00EPH95667
HNNMPMNJ_88790587711CspR4.12e-30cold shock protein84.6198.48AAO82613
HNNMPMNJ_88790587708CspA6.32e-30cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
HNNMPMNJ_173533136431repUS731101 / 110194.46CP002654
HNNMPMNJ_461921148repUS64958 / 95492.17JN601038

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
HNNMPMNJ_10.01.00.0
HNNMPMNJ_20.01.00.0
HNNMPMNJ_30.01.00.0
HNNMPMNJ_40.01.00.0
HNNMPMNJ_50.01.00.0
HNNMPMNJ_60.01.00.0
HNNMPMNJ_70.01.00.0
HNNMPMNJ_80.01.00.0
HNNMPMNJ_90.01.00.0
HNNMPMNJ_100.01.00.0
HNNMPMNJ_110.01.00.0
HNNMPMNJ_120.01.00.0
HNNMPMNJ_130.01.00.0
HNNMPMNJ_140.01.00.0
HNNMPMNJ_150.01.00.0
HNNMPMNJ_160.01.00.0
HNNMPMNJ_171.00.01.0
HNNMPMNJ_180.01.00.0
HNNMPMNJ_190.01.00.0
HNNMPMNJ_200.01.00.0
HNNMPMNJ_210.01.00.0
HNNMPMNJ_220.01.00.0
HNNMPMNJ_230.01.00.0
HNNMPMNJ_240.01.00.0
HNNMPMNJ_250.01.00.0
HNNMPMNJ_260.01.00.0
HNNMPMNJ_270.01.00.0
HNNMPMNJ_280.01.00.0
HNNMPMNJ_290.01.00.0
HNNMPMNJ_300.01.00.0
HNNMPMNJ_311.00.01.0
HNNMPMNJ_320.01.00.0
HNNMPMNJ_330.01.00.0
HNNMPMNJ_340.01.00.0
HNNMPMNJ_350.01.00.0
HNNMPMNJ_360.01.00.0
HNNMPMNJ_370.01.00.0
HNNMPMNJ_380.01.00.0
HNNMPMNJ_391.00.01.0
HNNMPMNJ_401.00.01.0
HNNMPMNJ_410.01.00.0
HNNMPMNJ_421.00.01.0
HNNMPMNJ_430.01.00.0
HNNMPMNJ_441.00.01.0
HNNMPMNJ_450.01.00.0
HNNMPMNJ_461.00.01.0
HNNMPMNJ_471.00.01.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
HNNMPMNJ_5358328729FalseSiphoviridaeVOG0045, VOG0796, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG9741, VOG4705, VOG5361
HNNMPMNJ_22724311716FalseUnknownVOG8925, VOG11016, VOG0321, VOG4548, VOG0322
HNNMPMNJ_221850338615FalseSiphoviridaeVOG6154, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888
HNNMPMNJ_456791594639FalseSiphoviridaeVOG0044, VOG1183, VOG0634, VOG0198, VOG4841, VOG0741, VOG0468, VOG4581, VOG1886, VOG0202, VOG4556, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG5904, VOG4605, VOG4599, VOG10957, VOG8870

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements