Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EFFJNFBD_23 | 45250 | 45951 | WalR | 1.02e-108 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EFFJNFBD_1 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_2 | 1.0 | 0.0 | 1.0 |
| EFFJNFBD_3 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_4 | 1.0 | 0.0 | 1.0 |
| EFFJNFBD_5 | 1.0 | 0.0 | 1.0 |
| EFFJNFBD_6 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_7 | 1.0 | 0.0 | 1.0 |
| EFFJNFBD_8 | 1.0 | 0.0 | 1.0 |
| EFFJNFBD_9 | 1.0 | 0.0 | 1.0 |
| EFFJNFBD_10 | 1.0 | 0.0 | 1.0 |
| EFFJNFBD_11 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_12 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_13 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_14 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_15 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_16 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_17 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_18 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_19 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_20 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_21 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_22 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_23 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_24 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_25 | 1.0 | 0.0 | 1.0 |
| EFFJNFBD_26 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_27 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_28 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_29 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_30 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_31 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_32 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_33 | 1.0 | 0.0 | 1.0 |
| EFFJNFBD_34 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_35 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_36 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_37 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_38 | 1.0 | 0.0 | 1.0 |
| EFFJNFBD_39 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_40 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_41 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_42 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_43 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_44 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_45 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_46 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_47 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_48 | 1.0 | 0.0 | 1.0 |
| EFFJNFBD_49 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_50 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_51 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_52 | 1.0 | 0.0 | 1.0 |
| EFFJNFBD_53 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_54 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_55 | 1.0 | 0.0 | 1.0 |
| EFFJNFBD_56 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_57 | 1.0 | 0.0 | 1.0 |
| EFFJNFBD_58 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_59 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_60 | 1.0 | 0.0 | 1.0 |
| EFFJNFBD_61 | 1.0 | 0.0 | 1.0 |
| EFFJNFBD_62 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_63 | 1.0 | 0.0 | 1.0 |
| EFFJNFBD_64 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_65 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_66 | 1.0 | 0.0 | 1.0 |
| EFFJNFBD_67 | 0.0 | 1.0 | 0.0 |
| EFFJNFBD_69 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EFFJNFBD_33 | 4480 | 35151 | False | Myoviridae | VOG4829, VOG0787, VOG1638, VOG0655, VOG9706, VOG1309, VOG0186, VOG4855, VOG4552, VOG4693, VOG6005, VOG0044, VOG0198, VOG0143, VOG0796, VOG10227, VOG1912, VOG4564, VOG4865, VOG1915, VOG2779, VOG1942, VOG4778, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG4910 |
| EFFJNFBD_34 | 19274 | 29303 | False | Siphoviridae | VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG0198 |
| EFFJNFBD_69 | 93299 | 138576 | False | Myoviridae | VOG0703, VOG5924, VOG8917, VOG3298, VOG3298, VOG10914, VOG6540, VOG4845, VOG4691, VOG0573, VOG1348, VOG1433, VOG1956, VOG4910, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4710, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG4544, VOG0275, VOG0796, VOG9295, VOG0198, VOG3643, VOG0536, VOG6140, VOG0044, VOG0822, VOG7484, VOG7685, VOG0514, VOG0025, VOG4799, VOG10904, VOG0226, VOG0322, VOG0685, VOG11003, VOG0650, VOG10059, VOG1656, VOG8520 |
Phigaro v2.4.0 (Database: Jan. 2024 release)