Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LLNCNCGL_22 | 79771 | 79968 | CspR | 9.77e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| LLNCNCGL_22 | 79771 | 79968 | CspA | 1.82e-28 | cold shock protein | 80.30 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LLNCNCGL_1 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_2 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_3 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_4 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_5 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_6 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_7 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_8 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_9 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_10 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_11 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_12 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_13 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_14 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_15 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_16 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_17 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_18 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_19 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_20 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_21 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_22 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_23 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_24 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_25 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_26 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_27 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_28 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_29 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_30 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_31 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_32 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_33 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_34 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_35 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_36 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_37 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_38 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_39 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_40 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_41 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_42 | 1.0 | 0.0 | 1.0 |
| LLNCNCGL_43 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_44 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_45 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_46 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_47 | 1.0 | 0.0 | 1.0 |
| LLNCNCGL_48 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_49 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_50 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_51 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_52 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_53 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_54 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_55 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_56 | 1.0 | 0.0 | 1.0 |
| LLNCNCGL_57 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_58 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_59 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_60 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_62 | 1.0 | 0.0 | 1.0 |
| LLNCNCGL_63 | 1.0 | 0.0 | 1.0 |
| LLNCNCGL_64 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_65 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_66 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_67 | 1.0 | 0.0 | 1.0 |
| LLNCNCGL_68 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_69 | 1.0 | 0.0 | 1.0 |
| LLNCNCGL_70 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_71 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_72 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_73 | 0.0 | 1.0 | 0.0 |
| LLNCNCGL_74 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LLNCNCGL_13 | 17449 | 37054 | False | Siphoviridae | VOG9231, VOG2785, VOG0862, VOG9667, VOG4552, VOG2228, VOG1309, VOG0186, VOG0226, VOG4566, VOG0198, VOG4618, VOG7312, VOG10227, VOG0720, VOG4564, VOG8945, VOG10914, VOG1319, VOG4713, VOG0723 |
| LLNCNCGL_27 | 4566 | 13784 | False | Siphoviridae | VOG0727, VOG4599, VOG0648, VOG0641, VOG8294, VOG9998 |
| LLNCNCGL_72 | 57406 | 65785 | False | Siphoviridae | VOG0275, VOG4585, VOG1159, VOG4677, VOG0275 |
| LLNCNCGL_74 | 5177 | 12609 | False | Siphoviridae | VOG2228, VOG1309, VOG0186, VOG0226, VOG0514, VOG4566, VOG0189, VOG8685, VOG10631 |
| LLNCNCGL_74 | 22758 | 50950 | False | Siphoviridae | VOG4581, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG6698, VOG8263, VOG0801, VOG3462, VOG10972, VOG3405, VOG9997, VOG4856, VOG10223, VOG8917, VOG7004 |
Phigaro v2.4.0 (Database: Jan. 2024 release)