Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JGKJGCKL_11 | 246465 | 245761 | WalR | 1.70e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| JGKJGCKL_12 | 5499 | 5693 | CspR | 4.12e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| JGKJGCKL_12 | 5499 | 5696 | CspA | 6.32e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JGKJGCKL_32 | 15367 | 16467 | repUS73 | 1101 / 1101 | 94.46 | CP002654 |
| JGKJGCKL_56 | 979 | 1935 | repUS64 | 958 / 954 | 92.17 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JGKJGCKL_2 | 1.0 | 0.0 | 1.0 |
| JGKJGCKL_3 | 1.0 | 0.0 | 1.0 |
| JGKJGCKL_4 | 1.0 | 0.0 | 1.0 |
| JGKJGCKL_5 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_6 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_7 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_8 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_9 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_10 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_11 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_12 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_13 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_14 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_15 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_16 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_17 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_18 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_19 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_20 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_21 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_22 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_23 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_24 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_25 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_26 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_27 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_28 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_29 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_30 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_31 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_32 | 1.0 | 0.0 | 1.0 |
| JGKJGCKL_33 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_34 | 1.0 | 0.0 | 1.0 |
| JGKJGCKL_35 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_36 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_37 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_38 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_39 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_40 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_41 | 1.0 | 0.0 | 1.0 |
| JGKJGCKL_42 | 1.0 | 0.0 | 1.0 |
| JGKJGCKL_43 | 1.0 | 0.0 | 1.0 |
| JGKJGCKL_44 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_45 | 1.0 | 0.0 | 1.0 |
| JGKJGCKL_46 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_47 | 1.0 | 0.0 | 1.0 |
| JGKJGCKL_48 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_49 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_50 | 1.0 | 0.0 | 1.0 |
| JGKJGCKL_51 | 1.0 | 0.0 | 1.0 |
| JGKJGCKL_52 | 1.0 | 0.0 | 1.0 |
| JGKJGCKL_53 | 1.0 | 0.0 | 1.0 |
| JGKJGCKL_54 | 0.0 | 1.0 | 0.0 |
| JGKJGCKL_55 | 1.0 | 0.0 | 1.0 |
| JGKJGCKL_56 | 1.0 | 0.0 | 1.0 |
| JGKJGCKL_57 | 1.0 | 0.0 | 1.0 |
| JGKJGCKL_58 | 1.0 | 0.0 | 1.0 |
| JGKJGCKL_59 | 1.0 | 0.0 | 1.0 |
| JGKJGCKL_60 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JGKJGCKL_9 | 3583 | 28729 | False | Siphoviridae | VOG0045, VOG0796, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG9741, VOG4705, VOG5361 |
| JGKJGCKL_26 | 7243 | 11716 | False | Unknown | VOG8925, VOG11016, VOG0321, VOG4548, VOG0322 |
| JGKJGCKL_26 | 18503 | 38615 | False | Siphoviridae | VOG6154, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888 |
| JGKJGCKL_48 | 67999 | 94723 | False | Siphoviridae | VOG0044, VOG1183, VOG0634, VOG0198, VOG4841, VOG0741, VOG0468, VOG4581, VOG1886, VOG0202, VOG4556, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG5904, VOG4605, VOG4599, VOG10957, VOG8870 |
Phigaro v2.4.0 (Database: Jan. 2024 release)