Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 8 | 1 | 0 | 8.06 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FDHCKDIO_8 | 354910 | 355404 | nimD | ARO:3007106 | nimD | 98.17 | 100.00 | X76949.1 |
| FDHCKDIO_3 | 328375 | 330321 | tet(Q) | ARO:3000191 | tet(Q) | 97.02 | 98.63 | Z21523.1 |
| FDHCKDIO_4 | 100638 | 101540 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
| FDHCKDIO_21 | 4943 | 5743 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| FDHCKDIO_20 | 862 | 1827 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| FDHCKDIO_27 | 519 | 1334 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FDHCKDIO_21 | 4943 | 5743 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| FDHCKDIO_20 | 862 | 1827 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| FDHCKDIO_20 | 862 | 1827 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| FDHCKDIO_20 | 862 | 1827 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| FDHCKDIO_20 | 862 | 1827 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| FDHCKDIO_27 | 519 | 1334 | sul2 | Sulfamethoxazole | 99.88 | 100.00 | AY034138 |
| FDHCKDIO_21 | 5956 | 6885 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.68 | 79.52 | M37699 |
| FDHCKDIO_4 | 100638 | 101540 | cepA | Unknown Beta-lactam | 99.67 | 100.00 | L13472 |
| FDHCKDIO_8 | 354910 | 355404 | nimD | Metronidazole | 98.99 | 100.00 | X76949 |
| FDHCKDIO_3 | 328375 | 330287 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.17 | 99.33 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FDHCKDIO_4 | 100638 | 101537 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
| FDHCKDIO_20 | 862 | 1824 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| FDHCKDIO_21 | 4943 | 5740 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| FDHCKDIO_27 | 522 | 1334 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| FDHCKDIO_21 | 5959 | 6876 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | PARTIALX | 99.67 | 78.87 | WP_008651082.1 |
| FDHCKDIO_8 | 354910 | 355401 | nimD | 5-nitroimidazole reductase NimD | BLASTX | 98.17 | 100.00 | WP_063854492.1 |
| FDHCKDIO_3 | 328375 | 330288 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.81 | 99.53 | WP_004293868.1 |
| FDHCKDIO_4 | 149 | 1102 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| FDHCKDIO_11 | 5769 | 6962 | bft-1 | 0.0 | BFT B. fragilis toxin, subtype 1 | Exotoxin | 100.00 | 100.00 | BAA77276 |
| FDHCKDIO_11 | 5769 | 6962 | bft-2 | 0.0 | BFT B. fragilis toxin, subtype 2 | Exotoxin | 94.89 | 100.00 | BAA77277 |
| FDHCKDIO_11 | 5769 | 6962 | bft-3 | 0.0 | BFT B. fragilis toxin, subtype 3 | Exotoxin | 94.47 | 100.00 | BAA77275 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| FDHCKDIO_26 | 1741 | 2420 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FDHCKDIO_1 | 0.0 | 1.0 | 0.0 |
| FDHCKDIO_2 | 0.0 | 1.0 | 0.0 |
| FDHCKDIO_3 | 0.0 | 1.0 | 0.0 |
| FDHCKDIO_4 | 0.0 | 1.0 | 0.0 |
| FDHCKDIO_5 | 0.0 | 1.0 | 0.0 |
| FDHCKDIO_6 | 0.0 | 1.0 | 0.0 |
| FDHCKDIO_7 | 0.0 | 1.0 | 0.0 |
| FDHCKDIO_8 | 0.0 | 1.0 | 0.0 |
| FDHCKDIO_9 | 0.0 | 1.0 | 0.0 |
| FDHCKDIO_10 | 0.0 | 1.0 | 0.0 |
| FDHCKDIO_11 | 0.0 | 1.0 | 0.0 |
| FDHCKDIO_12 | 0.0 | 1.0 | 0.0 |
| FDHCKDIO_13 | 0.0 | 1.0 | 0.0 |
| FDHCKDIO_14 | 0.0 | 1.0 | 0.0 |
| FDHCKDIO_15 | 0.0 | 1.0 | 0.0 |
| FDHCKDIO_16 | 0.0 | 1.0 | 0.0 |
| FDHCKDIO_17 | 0.0 | 1.0 | 0.0 |
| FDHCKDIO_18 | 0.0 | 1.0 | 0.0 |
| FDHCKDIO_19 | 0.0 | 1.0 | 0.0 |
| FDHCKDIO_20 | 0.0 | 1.0 | 0.0 |
| FDHCKDIO_21 | 1.0 | 0.0 | 1.0 |
| FDHCKDIO_22 | 0.0 | 1.0 | 0.0 |
| FDHCKDIO_23 | 1.0 | 0.0 | 1.0 |
| FDHCKDIO_25 | 0.0 | 1.0 | 0.0 |
| FDHCKDIO_26 | 1.0 | 0.0 | 1.0 |
| FDHCKDIO_27 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)