Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CBCHKEFP_1 | 302853 | 304827 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| CBCHKEFP_17 | 31552 | 32454 | CepA-44 | ARO:3006225 | CepA-44 | 99.00 | 100.00 | NG_050386.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CBCHKEFP_1 | 302853 | 304778 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| CBCHKEFP_17 | 31552 | 32454 | cepA | Unknown Beta-lactam | 99.67 | 100.00 | U05887 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CBCHKEFP_1 | 302856 | 304778 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| CBCHKEFP_17 | 31555 | 32454 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.33 | 100.00 | WP_005816369.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CBCHKEFP_1 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_2 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_3 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_4 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_5 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_6 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_7 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_8 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_9 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_10 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_11 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_12 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_13 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_14 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_15 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_16 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_17 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_18 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_19 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_20 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_21 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_22 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_23 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_24 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_25 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_26 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_27 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_28 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_29 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_30 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_31 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_32 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_33 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_34 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_35 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_36 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_37 | 1.0 | 0.0 | 1.0 |
| CBCHKEFP_38 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_39 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_40 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_41 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_42 | 1.0 | 0.0 | 1.0 |
| CBCHKEFP_43 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_44 | 1.0 | 0.0 | 1.0 |
| CBCHKEFP_45 | 1.0 | 0.0 | 1.0 |
| CBCHKEFP_46 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_47 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_48 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_49 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_50 | 1.0 | 0.0 | 1.0 |
| CBCHKEFP_51 | 1.0 | 0.0 | 1.0 |
| CBCHKEFP_52 | 1.0 | 0.0 | 1.0 |
| CBCHKEFP_53 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_54 | 1.0 | 0.0 | 1.0 |
| CBCHKEFP_55 | 1.0 | 0.0 | 1.0 |
| CBCHKEFP_56 | 1.0 | 0.0 | 1.0 |
| CBCHKEFP_57 | 1.0 | 0.0 | 1.0 |
| CBCHKEFP_58 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_59 | 1.0 | 0.0 | 1.0 |
| CBCHKEFP_60 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_61 | 1.0 | 0.0 | 1.0 |
| CBCHKEFP_62 | 1.0 | 0.0 | 1.0 |
| CBCHKEFP_63 | 1.0 | 0.0 | 1.0 |
| CBCHKEFP_64 | 1.0 | 0.0 | 1.0 |
| CBCHKEFP_65 | 1.0 | 0.0 | 1.0 |
| CBCHKEFP_66 | 1.0 | 0.0 | 1.0 |
| CBCHKEFP_68 | 1.0 | 0.0 | 1.0 |
| CBCHKEFP_69 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_71 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_72 | 0.0 | 1.0 | 0.0 |
| CBCHKEFP_73 | 1.0 | 0.0 | 1.0 |
| CBCHKEFP_74 | 1.0 | 0.0 | 1.0 |
| CBCHKEFP_75 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)