Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IJDHONMB_1 | 331948 | 332850 | CepA-49 | ARO:3006226 | CepA-49 | 100.00 | 100.00 | NG_050387.1 |
| IJDHONMB_1 | 173805 | 175010 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
| IJDHONMB_15 | 70873 | 72847 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| IJDHONMB_34 | 1116 | 2075 | CfxA5 | ARO:3003096 | CfxA5 | 100.00 | 99.38 | AY769934.1 |
| IJDHONMB_27 | 1110 | 1622 | nimE | ARO:3007107 | nimE | 100.00 | 100.00 | CP036548.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IJDHONMB_1 | 331948 | 332850 | cepA-49 | Unknown Beta-lactam | 100.00 | 100.00 | U05886 |
| IJDHONMB_27 | 1110 | 1622 | nimE | Metronidazole | 100.00 | 100.00 | AM042593 |
| IJDHONMB_15 | 70873 | 72798 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| IJDHONMB_34 | 1116 | 2076 | cfxA5 | Unknown Beta-lactam | 100.00 | 99.48 | AY769934 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IJDHONMB_1 | 331948 | 332847 | cepA-49 | extended-spectrum class A beta-lactamase CepA-49 | ALLELEX | 100.00 | 100.00 | WP_008659027.1 |
| IJDHONMB_27 | 1110 | 1619 | nimE | 5-nitroimidazole reductase NimE | EXACTX | 100.00 | 100.00 | WP_005812773.1 |
| IJDHONMB_15 | 70876 | 72798 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| IJDHONMB_34 | 1119 | 2075 | cfxA5 | broad-spectrum class A beta-lactamase CfxA5 | BLASTX | 100.00 | 99.38 | WP_032946415.1 |
| IJDHONMB_1 | 173271 | 173780 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
| IJDHONMB_1 | 173808 | 175010 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IJDHONMB_32 | 253 | 833 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IJDHONMB_1 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_2 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_3 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_4 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_5 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_6 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_7 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_8 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_9 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_10 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_11 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_12 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_13 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_14 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_15 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_16 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_17 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_18 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_19 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_20 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_21 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_22 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_23 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_24 | 1.0 | 0.0 | 1.0 |
| IJDHONMB_25 | 1.0 | 0.0 | 1.0 |
| IJDHONMB_26 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_27 | 1.0 | 0.0 | 1.0 |
| IJDHONMB_28 | 1.0 | 0.0 | 1.0 |
| IJDHONMB_30 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_31 | 1.0 | 0.0 | 1.0 |
| IJDHONMB_32 | 1.0 | 0.0 | 1.0 |
| IJDHONMB_34 | 1.0 | 0.0 | 1.0 |
| IJDHONMB_35 | 1.0 | 0.0 | 1.0 |
| IJDHONMB_36 | 0.0 | 1.0 | 0.0 |
| IJDHONMB_37 | 1.0 | 0.0 | 1.0 |
| IJDHONMB_38 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IJDHONMB_4 | 95358 | 101233 | False | Siphoviridae | VOG4556, |
Phigaro v2.4.0 (Database: Jan. 2024 release)