Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BLDNLIKI_20 | 35357 | 36259 | CepA-49 | ARO:3006226 | CepA-49 | 100.00 | 100.00 | NG_050387.1 |
| BLDNLIKI_28 | 25726 | 27720 | tet(Q) | ARO:3000191 | tet(Q) | 97.86 | 101.07 | Z21523.1 |
| BLDNLIKI_29 | 3331 | 5256 | tet(Q) | ARO:3000191 | tet(Q) | 89.24 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BLDNLIKI_20 | 35357 | 36259 | cepA-49 | Unknown Beta-lactam | 100.00 | 100.00 | U05886 |
| BLDNLIKI_28 | 25760 | 27672 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.75 | 99.33 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BLDNLIKI_20 | 35360 | 36259 | cepA-49 | extended-spectrum class A beta-lactamase CepA-49 | ALLELEX | 100.00 | 100.00 | WP_008659027.1 |
| BLDNLIKI_28 | 25759 | 27672 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.96 | 99.53 | WP_063856407.1 |
| BLDNLIKI_29 | 3331 | 5253 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.70 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BLDNLIKI_1 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_2 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_3 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_4 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_5 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_6 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_7 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_8 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_9 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_10 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_11 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_12 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_13 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_14 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_15 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_16 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_17 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_18 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_19 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_20 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_21 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_22 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_23 | 1.0 | 0.0 | 1.0 |
| BLDNLIKI_24 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_25 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_26 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_27 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_28 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_29 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_30 | 1.0 | 0.0 | 1.0 |
| BLDNLIKI_31 | 1.0 | 0.0 | 1.0 |
| BLDNLIKI_32 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_33 | 1.0 | 0.0 | 1.0 |
| BLDNLIKI_34 | 1.0 | 0.0 | 1.0 |
| BLDNLIKI_35 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_36 | 1.0 | 0.0 | 1.0 |
| BLDNLIKI_37 | 1.0 | 0.0 | 1.0 |
| BLDNLIKI_38 | 0.0 | 1.0 | 0.0 |
| BLDNLIKI_40 | 1.0 | 0.0 | 1.0 |
| BLDNLIKI_41 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BLDNLIKI_22 | 35090 | 44606 | False | Siphoviridae | VOG3349, |
Phigaro v2.4.0 (Database: Jan. 2024 release)