Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BCLCIEOA_1 | 697924 | 698826 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
| BCLCIEOA_8 | 162543 | 163508 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| BCLCIEOA_11 | 86941 | 88887 | tet(Q) | ARO:3000191 | tet(Q) | 98.90 | 98.63 | Z21523.1 |
| BCLCIEOA_11 | 81926 | 82726 | ErmF | ARO:3000498 | ErmF | 99.25 | 100.00 | M17124.1 |
| BCLCIEOA_15 | 4553 | 5065 | nimE | ARO:3007107 | nimE | 100.00 | 100.00 | CP036548.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BCLCIEOA_8 | 162543 | 163508 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| BCLCIEOA_15 | 4553 | 5065 | nimE | Metronidazole | 100.00 | 100.00 | AM042593 |
| BCLCIEOA_1 | 697924 | 698826 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | L13472 |
| BCLCIEOA_11 | 81926 | 82726 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M17808 |
| BCLCIEOA_11 | 86941 | 88853 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.32 | 99.33 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BCLCIEOA_1 | 697927 | 698826 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
| BCLCIEOA_8 | 162543 | 163505 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| BCLCIEOA_15 | 4553 | 5062 | nimE | 5-nitroimidazole reductase NimE | EXACTX | 100.00 | 100.00 | WP_005812773.1 |
| BCLCIEOA_11 | 81926 | 82723 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_002682030.1 |
| BCLCIEOA_11 | 86941 | 88854 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.90 | 99.53 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BCLCIEOA_1 | 0.0 | 1.0 | 0.0 |
| BCLCIEOA_2 | 0.0 | 1.0 | 0.0 |
| BCLCIEOA_3 | 0.0 | 1.0 | 0.0 |
| BCLCIEOA_4 | 0.0 | 1.0 | 0.0 |
| BCLCIEOA_5 | 0.0 | 1.0 | 0.0 |
| BCLCIEOA_6 | 0.0 | 1.0 | 0.0 |
| BCLCIEOA_7 | 0.0 | 1.0 | 0.0 |
| BCLCIEOA_8 | 0.0 | 1.0 | 0.0 |
| BCLCIEOA_9 | 0.0 | 1.0 | 0.0 |
| BCLCIEOA_10 | 0.0 | 1.0 | 0.0 |
| BCLCIEOA_11 | 0.0 | 1.0 | 0.0 |
| BCLCIEOA_12 | 0.0 | 1.0 | 0.0 |
| BCLCIEOA_13 | 0.0 | 1.0 | 0.0 |
| BCLCIEOA_14 | 0.0 | 1.0 | 0.0 |
| BCLCIEOA_15 | 1.0 | 0.0 | 1.0 |
| BCLCIEOA_16 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BCLCIEOA_4 | 402744 | 414594 | False | Siphoviridae | VOG11071, |
Phigaro v2.4.0 (Database: Jan. 2024 release)