Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NPFEMCEJ_16 | 111325 | 112059 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| NPFEMCEJ_16 | 20772 | 21674 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NPFEMCEJ_16 | 20772 | 21674 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | L13472 |
| NPFEMCEJ_16 | 111325 | 112059 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| NPFEMCEJ_16 | 112831 | 114294 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.61 | 100.00 | AF274302 |
| NPFEMCEJ_16 | 114420 | 115634 | mef(A) | Erythromycin, Azithromycin | 95.06 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NPFEMCEJ_16 | 20772 | 21671 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
| NPFEMCEJ_16 | 111328 | 112059 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| NPFEMCEJ_16 | 114411 | 115634 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 98.77 | 100.00 | WP_012102963.1 |
| NPFEMCEJ_16 | 112834 | 114294 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.33 | 100.00 | WP_000420313.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NPFEMCEJ_1 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_2 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_3 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_4 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_5 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_6 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_7 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_8 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_9 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_10 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_11 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_12 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_13 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_14 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_15 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_16 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_17 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_18 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_19 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_20 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_21 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_22 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_23 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_24 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_25 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_26 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_27 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_28 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_29 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_30 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_31 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_32 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_33 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_34 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_35 | 1.0 | 0.0 | 1.0 |
| NPFEMCEJ_36 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_37 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_38 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_39 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_40 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_41 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_42 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_43 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_44 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_45 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_46 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_47 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_48 | 1.0 | 0.0 | 1.0 |
| NPFEMCEJ_49 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_50 | 1.0 | 0.0 | 1.0 |
| NPFEMCEJ_51 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_52 | 1.0 | 0.0 | 1.0 |
| NPFEMCEJ_53 | 1.0 | 0.0 | 1.0 |
| NPFEMCEJ_54 | 1.0 | 0.0 | 1.0 |
| NPFEMCEJ_57 | 1.0 | 0.0 | 1.0 |
| NPFEMCEJ_58 | 1.0 | 0.0 | 1.0 |
| NPFEMCEJ_59 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_60 | 0.0 | 1.0 | 0.0 |
| NPFEMCEJ_61 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NPFEMCEJ_35 | 9825 | 15600 | False | Siphoviridae | VOG4556, |
| NPFEMCEJ_36 | 8899 | 16940 | False | Siphoviridae | VOG4581, |
Phigaro v2.4.0 (Database: Jan. 2024 release)