Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 1 | 0 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NDBHILEE_1 | 425435 | 427360 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| NDBHILEE_18 | 65236 | 66198 | cepA | ARO:3003559 | cepA | 99.67 | 106.67 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NDBHILEE_18 | 65296 | 66198 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | FR688022 |
| NDBHILEE_1 | 425435 | 427360 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NDBHILEE_18 | 65296 | 66195 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005816369.1 |
| NDBHILEE_1 | 425435 | 427357 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| NDBHILEE_18 | 56787 | 57980 | bft-2 | 0.0 | BFT B. fragilis toxin, subtype 2 | Exotoxin | 100.00 | 100.00 | BAA77277 |
| NDBHILEE_18 | 56787 | 57980 | bft-3 | 0.0 | BFT B. fragilis toxin, subtype 3 | Exotoxin | 96.90 | 100.00 | BAA77275 |
| NDBHILEE_18 | 56787 | 57980 | bft-1 | 0.0 | BFT B. fragilis toxin, subtype 1 | Exotoxin | 94.89 | 100.00 | BAA77276 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NDBHILEE_1 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_2 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_3 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_4 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_5 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_6 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_7 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_8 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_9 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_10 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_11 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_12 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_13 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_14 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_15 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_16 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_17 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_18 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_19 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_20 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_21 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_22 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_23 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_24 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_25 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_26 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_27 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_28 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_29 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_30 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_31 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_32 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_33 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_34 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_35 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_36 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_37 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_38 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_39 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_40 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_41 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_42 | 1.0 | 0.0 | 1.0 |
| NDBHILEE_43 | 1.0 | 0.0 | 1.0 |
| NDBHILEE_44 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_45 | 0.0 | 1.0 | 0.0 |
| NDBHILEE_46 | 1.0 | 0.0 | 1.0 |
| NDBHILEE_48 | 1.0 | 0.0 | 1.0 |
| NDBHILEE_49 | 1.0 | 0.0 | 1.0 |
| NDBHILEE_50 | 1.0 | 0.0 | 1.0 |
| NDBHILEE_51 | 1.0 | 0.0 | 1.0 |
| NDBHILEE_52 | 1.0 | 0.0 | 1.0 |
| NDBHILEE_54 | 1.0 | 0.0 | 1.0 |
| NDBHILEE_55 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NDBHILEE_3 | 101386 | 114563 | False | Siphoviridae | VOG4581, |
| NDBHILEE_11 | 77955 | 89418 | False | Myoviridae | VOG4575, |
| NDBHILEE_16 | 116957 | 125373 | False | Unknown | VOG4573, |
| NDBHILEE_24 | 49220 | 65075 | False | Unknown | VOG3003, |
Phigaro v2.4.0 (Database: Jan. 2024 release)