Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LCEOIEPA_8 | 159093 | 161018 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| LCEOIEPA_62 | 4840 | 5352 | nimE | ARO:3007107 | nimE | 100.00 | 100.00 | CP036548.1 |
| LCEOIEPA_65 | 3003 | 4928 | tet(Q) | ARO:3000191 | tet(Q) | 89.39 | 97.56 | Z21523.1 |
| LCEOIEPA_65 | 1129 | 2295 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 100.00 | M37699.1 |
| LCEOIEPA_65 | 116 | 916 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LCEOIEPA_65 | 116 | 916 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| LCEOIEPA_62 | 4840 | 5352 | nimE | Metronidazole | 100.00 | 100.00 | AM042593 |
| LCEOIEPA_65 | 1129 | 2295 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| LCEOIEPA_8 | 159093 | 161018 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LCEOIEPA_65 | 116 | 913 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| LCEOIEPA_62 | 4843 | 5352 | nimE | 5-nitroimidazole reductase NimE | EXACTX | 100.00 | 100.00 | WP_005812773.1 |
| LCEOIEPA_65 | 1132 | 2295 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| LCEOIEPA_8 | 159093 | 161015 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| LCEOIEPA_65 | 3006 | 4928 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.86 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LCEOIEPA_1 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_2 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_3 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_4 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_5 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_6 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_7 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_8 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_9 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_10 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_11 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_12 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_13 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_14 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_15 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_16 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_17 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_18 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_19 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_20 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_21 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_22 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_23 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_24 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_25 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_26 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_27 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_28 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_29 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_30 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_31 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_32 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_33 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_34 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_35 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_36 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_37 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_38 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_39 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_40 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_41 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_42 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_43 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_44 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_45 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_46 | 1.0 | 0.0 | 1.0 |
| LCEOIEPA_47 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_48 | 1.0 | 0.0 | 1.0 |
| LCEOIEPA_49 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_50 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_51 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_52 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_53 | 1.0 | 0.0 | 1.0 |
| LCEOIEPA_54 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_55 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_56 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_57 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_58 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_59 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_60 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_61 | 1.0 | 0.0 | 1.0 |
| LCEOIEPA_62 | 1.0 | 0.0 | 1.0 |
| LCEOIEPA_63 | 1.0 | 0.0 | 1.0 |
| LCEOIEPA_64 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_65 | 1.0 | 0.0 | 1.0 |
| LCEOIEPA_66 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_67 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_68 | 1.0 | 0.0 | 1.0 |
| LCEOIEPA_69 | 1.0 | 0.0 | 1.0 |
| LCEOIEPA_70 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_71 | 1.0 | 0.0 | 1.0 |
| LCEOIEPA_72 | 1.0 | 0.0 | 1.0 |
| LCEOIEPA_73 | 1.0 | 0.0 | 1.0 |
| LCEOIEPA_74 | 1.0 | 0.0 | 1.0 |
| LCEOIEPA_75 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_76 | 1.0 | 0.0 | 1.0 |
| LCEOIEPA_78 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_79 | 0.0 | 1.0 | 0.0 |
| LCEOIEPA_80 | 1.0 | 0.0 | 1.0 |
| LCEOIEPA_81 | 1.0 | 0.0 | 1.0 |
| LCEOIEPA_82 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)