Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GNEBNIEC_21 | 226460 | 225756 | WalR | 7.27e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| GNEBNIEC_54 | 92959 | 93156 | CspR | 1.90e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GNEBNIEC_2 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_5 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_7 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_8 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_9 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_10 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_13 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_17 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_19 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_20 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_21 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_24 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_25 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_27 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_30 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_34 | 1.0 | 0.0 | 1.0 |
| GNEBNIEC_35 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_36 | 1.0 | 0.0 | 1.0 |
| GNEBNIEC_38 | 1.0 | 0.0 | 1.0 |
| GNEBNIEC_41 | 1.0 | 0.0 | 1.0 |
| GNEBNIEC_42 | 1.0 | 0.0 | 1.0 |
| GNEBNIEC_43 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_47 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_48 | 1.0 | 0.0 | 1.0 |
| GNEBNIEC_49 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_52 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_54 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_78 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_81 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_83 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_85 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_86 | 0.0 | 1.0 | 0.0 |
| GNEBNIEC_88 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GNEBNIEC_7 | 7660 | 18510 | False | Siphoviridae | VOG6142, VOG4694, VOG11003, VOG1638, VOG6238, VOG4566, VOG1292, VOG0083, VOG0083, VOG0650, VOG3549, VOG9667, VOG0862 |
| GNEBNIEC_54 | 13710 | 23957 | False | Siphoviridae | VOG4632, VOG4609, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG4589 |
| GNEBNIEC_83 | 109287 | 148901 | False | Siphoviridae | VOG8303, VOG4918, VOG0703, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG8134, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG4570, VOG10481, VOG0143, VOG0198, VOG0044, VOG1298, VOG3643, VOG0152, VOG9759, VOG4693, VOG7735, VOG0025, VOG4799, VOG3642, VOG10867, VOG0181, VOG10059 |
Phigaro v2.4.0 (Database: Jan. 2024 release)