Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MLMNHLNH_169 | 54042 | 54746 | WalR | 7.42e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| MLMNHLNH_47 | 14964 | 14767 | CspR | 4.09e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MLMNHLNH_4 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_6 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_10 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_12 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_15 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_17 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_18 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_19 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_21 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_25 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_26 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_28 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_30 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_32 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_34 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_35 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_38 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_40 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_41 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_43 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_45 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_46 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_47 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_48 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_50 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_51 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_60 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_71 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_82 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_92 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_103 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_108 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_109 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_110 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_111 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_112 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_113 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_114 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_115 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_116 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_117 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_118 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_119 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_120 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_121 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_122 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_123 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_124 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_125 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_126 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_127 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_128 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_129 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_130 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_131 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_132 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_133 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_134 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_135 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_136 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_137 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_138 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_139 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_140 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_141 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_142 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_143 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_144 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_145 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_146 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_148 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_149 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_150 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_152 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_153 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_155 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_156 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_157 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_158 | 1.0 | 0.0 | 1.0 |
| MLMNHLNH_164 | 0.0 | 1.0 | 0.0 |
| MLMNHLNH_169 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MLMNHLNH_17 | 75420 | 80288 | False | Unknown | VOG1309, VOG0186, VOG4566, VOG0189, VOG4688, VOG6623 |
| MLMNHLNH_18 | 4682 | 6440 | False | Unknown | VOG0703, VOG8294 |
| MLMNHLNH_19 | 47945 | 72583 | False | Siphoviridae | VOG1724, VOG0866, VOG4918, VOG0703, VOG7017, VOG0861, VOG6455, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796 |
| MLMNHLNH_28 | 41942 | 52991 | False | Siphoviridae | VOG0226, VOG4841, VOG0195, VOG4581, VOG1886, VOG0202, VOG4556, VOG4568, VOG0205, VOG0207, VOG4586 |
| MLMNHLNH_46 | 55115 | 61663 | False | Siphoviridae | VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205 |
Phigaro v2.4.0 (Database: Jan. 2024 release)