Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NGNAHMPJ_142 | 54042 | 54746 | WalR | 7.42e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| NGNAHMPJ_59 | 14964 | 14767 | CspR | 4.09e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NGNAHMPJ_2 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_5 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_7 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_8 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_11 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_13 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_16 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_17 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_18 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_19 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_20 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_23 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_25 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_26 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_28 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_29 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_31 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_32 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_33 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_35 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_36 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_37 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_48 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_59 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_68 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_77 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_81 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_82 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_83 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_84 | 1.0 | 0.0 | 1.0 |
| NGNAHMPJ_85 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_86 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_87 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_88 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_89 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_90 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_91 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_92 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_93 | 1.0 | 0.0 | 1.0 |
| NGNAHMPJ_94 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_95 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_96 | 1.0 | 0.0 | 1.0 |
| NGNAHMPJ_97 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_98 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_99 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_100 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_101 | 1.0 | 0.0 | 1.0 |
| NGNAHMPJ_102 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_103 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_104 | 1.0 | 0.0 | 1.0 |
| NGNAHMPJ_105 | 1.0 | 0.0 | 1.0 |
| NGNAHMPJ_106 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_107 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_108 | 1.0 | 0.0 | 1.0 |
| NGNAHMPJ_109 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_110 | 1.0 | 0.0 | 1.0 |
| NGNAHMPJ_111 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_112 | 1.0 | 0.0 | 1.0 |
| NGNAHMPJ_113 | 1.0 | 0.0 | 1.0 |
| NGNAHMPJ_114 | 1.0 | 0.0 | 1.0 |
| NGNAHMPJ_115 | 1.0 | 0.0 | 1.0 |
| NGNAHMPJ_116 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_117 | 1.0 | 0.0 | 1.0 |
| NGNAHMPJ_118 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_119 | 1.0 | 0.0 | 1.0 |
| NGNAHMPJ_120 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_121 | 1.0 | 0.0 | 1.0 |
| NGNAHMPJ_122 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_123 | 1.0 | 0.0 | 1.0 |
| NGNAHMPJ_124 | 1.0 | 0.0 | 1.0 |
| NGNAHMPJ_125 | 1.0 | 0.0 | 1.0 |
| NGNAHMPJ_127 | 1.0 | 0.0 | 1.0 |
| NGNAHMPJ_128 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_129 | 1.0 | 0.0 | 1.0 |
| NGNAHMPJ_130 | 1.0 | 0.0 | 1.0 |
| NGNAHMPJ_131 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_133 | 1.0 | 0.0 | 1.0 |
| NGNAHMPJ_135 | 1.0 | 0.0 | 1.0 |
| NGNAHMPJ_136 | 1.0 | 0.0 | 1.0 |
| NGNAHMPJ_139 | 0.0 | 1.0 | 0.0 |
| NGNAHMPJ_142 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NGNAHMPJ_8 | 2746 | 7614 | False | Unknown | VOG4693, VOG6623, VOG4688, VOG0189, VOG4566, VOG0186, VOG1309 |
| NGNAHMPJ_13 | 1083 | 25721 | False | Siphoviridae | VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG1322, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG6455, VOG0861, VOG7017, VOG0703, VOG4918, VOG0866 |
| NGNAHMPJ_19 | 4857 | 15906 | False | Siphoviridae | VOG0209, VOG4586, VOG0207, VOG0205, VOG4568, VOG4556, VOG0202, VOG1886, VOG4581, VOG0195, VOG4841 |
| NGNAHMPJ_33 | 32799 | 34557 | False | Unknown | VOG8294 |
| NGNAHMPJ_37 | 55115 | 61663 | False | Siphoviridae | VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205 |
Phigaro v2.4.0 (Database: Jan. 2024 release)