Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HNDJENEA_19 | 398088 | 398792 | WalR | 6.68e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| HNDJENEA_51 | 138245 | 138442 | CspR | 2.14e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HNDJENEA_2 | 0.0 | 1.0 | 0.0 |
| HNDJENEA_4 | 0.0 | 1.0 | 0.0 |
| HNDJENEA_7 | 0.0 | 1.0 | 0.0 |
| HNDJENEA_9 | 0.0 | 1.0 | 0.0 |
| HNDJENEA_12 | 0.0 | 1.0 | 0.0 |
| HNDJENEA_13 | 0.0 | 1.0 | 0.0 |
| HNDJENEA_14 | 1.0 | 0.0 | 1.0 |
| HNDJENEA_15 | 0.0 | 1.0 | 0.0 |
| HNDJENEA_17 | 0.0 | 1.0 | 0.0 |
| HNDJENEA_18 | 0.0 | 1.0 | 0.0 |
| HNDJENEA_19 | 0.0 | 1.0 | 0.0 |
| HNDJENEA_20 | 0.0 | 1.0 | 0.0 |
| HNDJENEA_21 | 0.0 | 1.0 | 0.0 |
| HNDJENEA_22 | 0.0 | 1.0 | 0.0 |
| HNDJENEA_23 | 1.0 | 0.0 | 1.0 |
| HNDJENEA_26 | 0.0 | 1.0 | 0.0 |
| HNDJENEA_37 | 0.0 | 1.0 | 0.0 |
| HNDJENEA_47 | 1.0 | 0.0 | 1.0 |
| HNDJENEA_48 | 0.0 | 1.0 | 0.0 |
| HNDJENEA_49 | 1.0 | 0.0 | 1.0 |
| HNDJENEA_50 | 1.0 | 0.0 | 1.0 |
| HNDJENEA_51 | 0.0 | 1.0 | 0.0 |
| HNDJENEA_52 | 1.0 | 0.0 | 1.0 |
| HNDJENEA_53 | 1.0 | 0.0 | 1.0 |
| HNDJENEA_54 | 1.0 | 0.0 | 1.0 |
| HNDJENEA_55 | 1.0 | 0.0 | 1.0 |
| HNDJENEA_57 | 1.0 | 0.0 | 1.0 |
| HNDJENEA_58 | 1.0 | 0.0 | 1.0 |
| HNDJENEA_59 | 0.0 | 1.0 | 0.0 |
| HNDJENEA_60 | 1.0 | 0.0 | 1.0 |
| HNDJENEA_62 | 0.0 | 1.0 | 0.0 |
| HNDJENEA_63 | 1.0 | 0.0 | 1.0 |
| HNDJENEA_65 | 0.0 | 1.0 | 0.0 |
| HNDJENEA_66 | 0.0 | 1.0 | 0.0 |
| HNDJENEA_69 | 0.0 | 1.0 | 0.0 |
| HNDJENEA_71 | 0.0 | 1.0 | 0.0 |
| HNDJENEA_74 | 0.0 | 1.0 | 0.0 |
| HNDJENEA_75 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HNDJENEA_9 | 31829 | 42679 | False | Siphoviridae | VOG9312, VOG0862, VOG9667, VOG3549, VOG0650, VOG0083, VOG0083, VOG1292, VOG4566, VOG6238, VOG1638, VOG11003, VOG4694 |
| HNDJENEA_51 | 58996 | 69243 | False | Siphoviridae | VOG4632, VOG4609, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG4589 |
| HNDJENEA_71 | 109287 | 148901 | False | Siphoviridae | VOG8303, VOG4918, VOG0703, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG8134, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG4570, VOG10481, VOG0143, VOG0198, VOG0044, VOG1298, VOG3643, VOG0152, VOG9759, VOG4693, VOG7735, VOG0025, VOG4799, VOG3642, VOG10867, VOG0181, VOG10059 |
Phigaro v2.4.0 (Database: Jan. 2024 release)