Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DAKGGHOE_17 | 45250 | 45951 | WalR | 1.02e-108 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DAKGGHOE_1 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_2 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_3 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_4 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_5 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_6 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_7 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_8 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_9 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_10 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_11 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_12 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_13 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_14 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_15 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_16 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_17 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_18 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_19 | 1.0 | 0.0 | 1.0 |
| DAKGGHOE_20 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_21 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_22 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_23 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_24 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_25 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_26 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_27 | 1.0 | 0.0 | 1.0 |
| DAKGGHOE_28 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_29 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_30 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_31 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_32 | 1.0 | 0.0 | 1.0 |
| DAKGGHOE_33 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_34 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_35 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_36 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_37 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_38 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_39 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_40 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_41 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_42 | 1.0 | 0.0 | 1.0 |
| DAKGGHOE_43 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_44 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_45 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_46 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_47 | 1.0 | 0.0 | 1.0 |
| DAKGGHOE_48 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_49 | 1.0 | 0.0 | 1.0 |
| DAKGGHOE_50 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_51 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_52 | 1.0 | 0.0 | 1.0 |
| DAKGGHOE_53 | 1.0 | 0.0 | 1.0 |
| DAKGGHOE_54 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_55 | 1.0 | 0.0 | 1.0 |
| DAKGGHOE_56 | 1.0 | 0.0 | 1.0 |
| DAKGGHOE_57 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_59 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_60 | 1.0 | 0.0 | 1.0 |
| DAKGGHOE_61 | 0.0 | 1.0 | 0.0 |
| DAKGGHOE_62 | 1.0 | 0.0 | 1.0 |
| DAKGGHOE_63 | 1.0 | 0.0 | 1.0 |
| DAKGGHOE_64 | 1.0 | 0.0 | 1.0 |
| DAKGGHOE_65 | 1.0 | 0.0 | 1.0 |
| DAKGGHOE_66 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DAKGGHOE_3 | 9656 | 54933 | False | Myoviridae | VOG0862, VOG8520, VOG1656, VOG10059, VOG0650, VOG11003, VOG0685, VOG0322, VOG0226, VOG10904, VOG4799, VOG0025, VOG0514, VOG7685, VOG7484, VOG0822, VOG0044, VOG6140, VOG0536, VOG3643, VOG0198, VOG9295, VOG0796, VOG0275, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4710, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG4910, VOG1956, VOG1433, VOG1348, VOG0573, VOG4691, VOG4845, VOG6540, VOG10914, VOG3298, VOG3298, VOG8917, VOG5924 |
| DAKGGHOE_27 | 993 | 31664 | False | Myoviridae | VOG1956, VOG4910, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4778, VOG1942, VOG2779, VOG1915, VOG4865, VOG4564, VOG1912, VOG10227, VOG0796, VOG0143, VOG0198, VOG0044, VOG6005, VOG4693, VOG4552, VOG4855, VOG0186, VOG1309, VOG9706, VOG0655, VOG1638, VOG0787 |
| DAKGGHOE_28 | 19274 | 29303 | False | Siphoviridae | VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)