Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CGAFBNEO_1 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_2 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_3 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_4 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_6 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_7 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_8 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_10 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_11 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_12 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_13 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_14 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_15 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_16 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_18 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_19 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_20 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_21 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_22 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_23 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_24 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_25 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_26 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_27 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_28 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_30 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_31 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_32 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_33 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_34 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_36 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_37 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_38 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_39 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_40 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_42 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_43 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_44 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_45 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_46 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_48 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_49 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_50 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_51 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_52 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_54 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_55 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_56 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_57 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_58 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_59 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_60 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_61 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_63 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_65 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_67 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_70 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_71 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_73 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_76 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_78 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_80 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_81 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_82 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_84 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_85 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_87 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_88 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_89 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_90 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_92 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_93 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_94 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_96 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_97 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_98 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_99 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_101 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_102 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_104 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_106 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_108 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_111 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_112 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_113 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_115 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_116 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_119 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_120 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_122 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_125 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_129 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_131 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_133 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_134 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_135 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_136 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_137 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_138 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_139 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_141 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_143 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_145 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_147 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_148 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_150 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_153 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_154 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_155 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_157 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_158 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_159 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_160 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_162 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_163 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_164 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_165 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_167 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_168 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_169 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_171 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_172 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_174 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_175 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_176 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_177 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_178 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_179 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_180 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_181 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_182 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_183 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_184 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_185 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_186 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_188 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_190 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_192 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_193 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_194 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_197 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_199 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_200 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_201 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_202 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_203 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_205 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_206 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_207 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_208 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_209 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_210 | 0.0 | 1.0 | 0.0 |
| CGAFBNEO_211 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_213 | 1.0 | 0.0 | 1.0 |
| CGAFBNEO_214 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CGAFBNEO_44 | 17895 | 42771 | False | Myoviridae | VOG0376, VOG2545, VOG0796, VOG7407, VOG1912, VOG5027, VOG4918, VOG1915, VOG1942, VOG4778, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG6163, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691 |
| CGAFBNEO_51 | 4009 | 6978 | False | Siphoviridae | VOG9667, VOG4603, VOG4552, VOG2703 |
| CGAFBNEO_51 | 14303 | 39661 | False | Siphoviridae | VOG4618, VOG5532, VOG4544, VOG0691, VOG0692, VOG0686, VOG4555, VOG1329, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4760, VOG4633, VOG4659, VOG4645, VOG4856 |
| CGAFBNEO_76 | 3617 | 7343 | False | Siphoviridae | VOG8520, VOG8520, VOG0862, VOG1638, VOG0787 |
| CGAFBNEO_93 | 16588 | 27783 | False | Myoviridae / Siphoviridae | VOG4705, VOG2090, VOG2352, VOG4010, VOG0275, VOG0371, VOG4602, VOG8520, VOG8520 |
| CGAFBNEO_108 | 4113 | 17168 | False | Siphoviridae | VOG0207, VOG0209, VOG4545, VOG4633 |
| CGAFBNEO_172 | 15415 | 23091 | False | Siphoviridae | VOG2406, VOG8561, VOG0275, VOG1561, VOG4602, VOG9667, VOG0010, VOG4995, VOG10735 |
| CGAFBNEO_172 | 33241 | 47235 | False | Myoviridae | VOG9667, VOG0198, VOG8269, VOG0638, VOG4618, VOG1837, VOG7407, VOG1912, VOG5027, VOG1915, VOG1942, VOG4710, VOG1353, VOG1883, VOG1352 |
| CGAFBNEO_184 | 1841 | 28174 | False | Siphoviridae | VOG0327, VOG3519, VOG6005, VOG0198, VOG4841, VOG4581, VOG2545, VOG0376, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG0209, VOG0660, VOG8263, VOG4633, VOG4659, VOG8355, VOG1594, VOG6540 |
| CGAFBNEO_201 | 6431 | 19679 | False | Myoviridae | VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4778, VOG1942, VOG6932, VOG1915, VOG4865, VOG5027, VOG1912, VOG7407, VOG0796, VOG0686, VOG0198 |
| CGAFBNEO_214 | 1760 | 26789 | False | Siphoviridae | VOG3349, VOG0198, VOG4841, VOG4581, VOG10115, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG4545, VOG4633, VOG4659, VOG8355, VOG1594, VOG0566, VOG4705 |
Phigaro v2.4.0 (Database: Jan. 2024 release)