Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CMAAJMHE_152 | 59234 | 59938 | WalR | 9.53e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| CMAAJMHE_163 | 110831 | 110637 | CspR | 7.22e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| CMAAJMHE_163 | 110831 | 110634 | CspA | 1.11e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CMAAJMHE_145 | 1246 | 2181 | rep28 | 936 / 936 | 100.00 | CP005948 |
| CMAAJMHE_175 | 471 | 1427 | repUS64 | 958 / 954 | 92.17 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CMAAJMHE_1 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_2 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_13 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_24 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_35 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_46 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_57 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_68 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_77 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_88 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_98 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_109 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_110 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_121 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_122 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_123 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_124 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_125 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_126 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_127 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_128 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_129 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_130 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_131 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_132 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_133 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_134 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_135 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_136 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_137 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_138 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_139 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_140 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_141 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_142 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_143 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_144 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_145 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_146 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_147 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_148 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_149 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_150 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_151 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_152 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_153 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_154 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_155 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_156 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_157 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_158 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_159 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_160 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_161 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_163 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_164 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_165 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_166 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_167 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_168 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_169 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_170 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_171 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_172 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_173 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_174 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_175 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_176 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_178 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_179 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_180 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_181 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_182 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_183 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_184 | 1.0 | 0.0 | 1.0 |
| CMAAJMHE_185 | 0.0 | 1.0 | 0.0 |
| CMAAJMHE_196 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CMAAJMHE_2 | 22717 | 48522 | False | Siphoviridae | VOG0753, VOG4615, VOG4705, VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616 |
| CMAAJMHE_2 | 55539 | 74064 | False | Siphoviridae | VOG9667, VOG4602, VOG7508, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| CMAAJMHE_130 | 118857 | 149262 | False | Siphoviridae | VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG1049, VOG3643, VOG0044, VOG10015, VOG4567, VOG5258, VOG4693, VOG11024, VOG0189, VOG4566, VOG0514, VOG6545, VOG0322, VOG0685 |
Phigaro v2.4.0 (Database: Jan. 2024 release)