Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LLCBLIMC_79 | 113214 | 112510 | WalR | 9.53e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| LLCBLIMC_90 | 110777 | 110583 | CspR | 7.22e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| LLCBLIMC_90 | 110777 | 110580 | CspA | 1.11e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LLCBLIMC_75 | 6737 | 7672 | rep28 | 936 / 936 | 100.00 | CP005948 |
| LLCBLIMC_92 | 820 | 1776 | repUS64 | 958 / 954 | 92.17 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LLCBLIMC_1 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_2 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_13 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_24 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_35 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_40 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_41 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_42 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_43 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_44 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_45 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_46 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_47 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_48 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_49 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_50 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_51 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_52 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_53 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_54 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_55 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_56 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_57 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_58 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_59 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_60 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_61 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_62 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_63 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_64 | 1.0 | 0.0 | 1.0 |
| LLCBLIMC_65 | 1.0 | 0.0 | 1.0 |
| LLCBLIMC_66 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_67 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_68 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_69 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_70 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_71 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_72 | 1.0 | 0.0 | 1.0 |
| LLCBLIMC_73 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_74 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_75 | 1.0 | 0.0 | 1.0 |
| LLCBLIMC_76 | 1.0 | 0.0 | 1.0 |
| LLCBLIMC_77 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_78 | 1.0 | 0.0 | 1.0 |
| LLCBLIMC_79 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_80 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_81 | 1.0 | 0.0 | 1.0 |
| LLCBLIMC_82 | 1.0 | 0.0 | 1.0 |
| LLCBLIMC_83 | 1.0 | 0.0 | 1.0 |
| LLCBLIMC_84 | 1.0 | 0.0 | 1.0 |
| LLCBLIMC_85 | 1.0 | 0.0 | 1.0 |
| LLCBLIMC_86 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_87 | 1.0 | 0.0 | 1.0 |
| LLCBLIMC_88 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_89 | 1.0 | 0.0 | 1.0 |
| LLCBLIMC_90 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_91 | 1.0 | 0.0 | 1.0 |
| LLCBLIMC_92 | 1.0 | 0.0 | 1.0 |
| LLCBLIMC_93 | 1.0 | 0.0 | 1.0 |
| LLCBLIMC_94 | 1.0 | 0.0 | 1.0 |
| LLCBLIMC_95 | 1.0 | 0.0 | 1.0 |
| LLCBLIMC_101 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_112 | 0.0 | 1.0 | 0.0 |
| LLCBLIMC_123 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LLCBLIMC_13 | 22684 | 48489 | False | Siphoviridae | VOG0753, VOG4615, VOG4705, VOG9955, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616 |
| LLCBLIMC_13 | 55506 | 74031 | False | Siphoviridae | VOG9667, VOG4602, VOG7508, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| LLCBLIMC_57 | 66523 | 96928 | False | Siphoviridae | VOG0685, VOG0322, VOG6545, VOG0514, VOG4566, VOG0189, VOG11024, VOG4693, VOG5258, VOG4567, VOG10015, VOG0044, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957 |
Phigaro v2.4.0 (Database: Jan. 2024 release)