Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DJHCJPJI_12 | 192136 | 193101 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| DJHCJPJI_44 | 6520 | 7320 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DJHCJPJI_44 | 6520 | 7320 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| DJHCJPJI_12 | 192136 | 193101 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| DJHCJPJI_12 | 192136 | 193101 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| DJHCJPJI_12 | 192136 | 193101 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| DJHCJPJI_12 | 192136 | 193101 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DJHCJPJI_12 | 192136 | 193098 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| DJHCJPJI_44 | 6520 | 7317 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DJHCJPJI_34 | 88849 | 87269 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DJHCJPJI_1 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_2 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_3 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_4 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_5 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_6 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_7 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_8 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_9 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_10 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_11 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_12 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_13 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_14 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_15 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_16 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_17 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_18 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_19 | 1.0 | 0.0 | 1.0 |
| DJHCJPJI_20 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_21 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_22 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_23 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_24 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_25 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_26 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_27 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_28 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_29 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_30 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_31 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_32 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_33 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_34 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_35 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_36 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_37 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_38 | 1.0 | 0.0 | 1.0 |
| DJHCJPJI_39 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_40 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_41 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_42 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_43 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_44 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_45 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_46 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_47 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_48 | 1.0 | 0.0 | 1.0 |
| DJHCJPJI_50 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_52 | 1.0 | 0.0 | 1.0 |
| DJHCJPJI_53 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_54 | 1.0 | 0.0 | 1.0 |
| DJHCJPJI_56 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_57 | 1.0 | 0.0 | 1.0 |
| DJHCJPJI_58 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_59 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_60 | 1.0 | 0.0 | 1.0 |
| DJHCJPJI_61 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_62 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_64 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_65 | 1.0 | 0.0 | 1.0 |
| DJHCJPJI_66 | 1.0 | 0.0 | 1.0 |
| DJHCJPJI_67 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_71 | 0.0 | 1.0 | 0.0 |
| DJHCJPJI_72 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DJHCJPJI_2 | 23142 | 32140 | False | Siphoviridae | VOG4564, |
Phigaro v2.4.0 (Database: Jan. 2024 release)