Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OOCKGAHD_20 | 19047 | 19847 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| OOCKGAHD_32 | 4975 | 6900 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OOCKGAHD_32 | 4975 | 6900 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| OOCKGAHD_20 | 19047 | 19847 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OOCKGAHD_32 | 4978 | 6900 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| OOCKGAHD_20 | 19050 | 19847 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OOCKGAHD_49 | 66 | 745 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OOCKGAHD_1 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_2 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_3 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_4 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_5 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_6 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_7 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_8 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_9 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_10 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_11 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_12 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_13 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_14 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_15 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_16 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_17 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_18 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_19 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_20 | 1.0 | 0.0 | 1.0 |
| OOCKGAHD_21 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_22 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_23 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_24 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_25 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_26 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_27 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_28 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_29 | 1.0 | 0.0 | 1.0 |
| OOCKGAHD_30 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_31 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_32 | 1.0 | 0.0 | 1.0 |
| OOCKGAHD_33 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_34 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_35 | 1.0 | 0.0 | 1.0 |
| OOCKGAHD_37 | 1.0 | 0.0 | 1.0 |
| OOCKGAHD_38 | 1.0 | 0.0 | 1.0 |
| OOCKGAHD_39 | 1.0 | 0.0 | 1.0 |
| OOCKGAHD_40 | 1.0 | 0.0 | 1.0 |
| OOCKGAHD_41 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_42 | 1.0 | 0.0 | 1.0 |
| OOCKGAHD_43 | 1.0 | 0.0 | 1.0 |
| OOCKGAHD_44 | 1.0 | 0.0 | 1.0 |
| OOCKGAHD_45 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_46 | 1.0 | 0.0 | 1.0 |
| OOCKGAHD_47 | 1.0 | 0.0 | 1.0 |
| OOCKGAHD_48 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_49 | 1.0 | 0.0 | 1.0 |
| OOCKGAHD_50 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_56 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_58 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_59 | 0.0 | 1.0 | 0.0 |
| OOCKGAHD_60 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OOCKGAHD_1 | 730214 | 740488 | False | Myoviridae | VOG4691, |
| OOCKGAHD_14 | 7026 | 15395 | False | Siphoviridae | VOG4589, |
| OOCKGAHD_19 | 6429 | 16544 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)