Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NHHAFJNB_2 | 27102 | 29021 | tet(O) | ARO:3000190 | tet(O) | 93.74 | 100.00 | M18896.2 |
| NHHAFJNB_2 | 25831 | 27051 | tet(40) | ARO:3000567 | tet(40) | 99.51 | 100.00 | AM419751.1 |
| NHHAFJNB_36 | 3157 | 3894 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NHHAFJNB_36 | 3157 | 3894 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | U86375 |
| NHHAFJNB_2 | 25831 | 27051 | tet(40) | Doxycycline, Tetracycline | 99.84 | 100.00 | AM419751 |
| NHHAFJNB_2 | 27102 | 29021 | tet(O/32/O) | Doxycycline, Tetracycline, Minocycline | 99.79 | 100.00 | AIOQ01000025 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NHHAFJNB_36 | 3160 | 3894 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_001038790.1 |
| NHHAFJNB_2 | 25834 | 27051 | tet(40) | tetracycline efflux MFS transporter Tet(40) | BLASTX | 99.75 | 100.00 | WP_015573055.1 |
| NHHAFJNB_2 | 27105 | 29021 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 94.05 | 100.00 | WP_012669445.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NHHAFJNB_36 | 671 | 2161 | rep1 | 1491 / 1491 | 100.00 | AE016833 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NHHAFJNB_1 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_2 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_3 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_4 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_5 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_6 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_7 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_8 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_9 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_10 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_11 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_12 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_13 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_14 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_15 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_16 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_17 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_18 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_19 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_20 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_21 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_22 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_23 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_24 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_25 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_26 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_27 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_28 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_29 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_30 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_31 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_32 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_33 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_34 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_35 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_36 | 1.0 | 0.0 | 1.0 |
| NHHAFJNB_37 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_38 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_39 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_40 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_41 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_42 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_43 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_44 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_45 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_46 | 1.0 | 0.0 | 1.0 |
| NHHAFJNB_47 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_48 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_49 | 1.0 | 0.0 | 1.0 |
| NHHAFJNB_50 | 1.0 | 0.0 | 1.0 |
| NHHAFJNB_51 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_52 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_53 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_54 | 1.0 | 0.0 | 1.0 |
| NHHAFJNB_55 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_56 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_58 | 1.0 | 0.0 | 1.0 |
| NHHAFJNB_59 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_60 | 1.0 | 0.0 | 1.0 |
| NHHAFJNB_62 | 1.0 | 0.0 | 1.0 |
| NHHAFJNB_63 | 1.0 | 0.0 | 1.0 |
| NHHAFJNB_65 | 1.0 | 0.0 | 1.0 |
| NHHAFJNB_67 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_68 | 1.0 | 0.0 | 1.0 |
| NHHAFJNB_71 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_74 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_75 | 1.0 | 0.0 | 1.0 |
| NHHAFJNB_76 | 1.0 | 0.0 | 1.0 |
| NHHAFJNB_78 | 0.0 | 1.0 | 0.0 |
| NHHAFJNB_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)