Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KPEAFPPP_23 | 200765 | 202739 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| KPEAFPPP_54 | 27842 | 28642 | ErmF | ARO:3000498 | ErmF | 99.25 | 100.00 | M17124.1 |
| KPEAFPPP_11 | 25972 | 26874 | cepA | ARO:3003559 | cepA | 99.67 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KPEAFPPP_23 | 200765 | 202690 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| KPEAFPPP_54 | 27842 | 28642 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M17808 |
| KPEAFPPP_11 | 25972 | 26874 | cepA | Unknown Beta-lactam | 99.78 | 100.00 | L13472 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KPEAFPPP_23 | 200768 | 202690 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| KPEAFPPP_11 | 25972 | 26871 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_005795628.1 |
| KPEAFPPP_54 | 27842 | 28639 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KPEAFPPP_1 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_2 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_3 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_4 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_5 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_6 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_7 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_8 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_9 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_10 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_11 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_12 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_13 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_14 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_15 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_16 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_17 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_18 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_19 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_20 | 1.0 | 0.0 | 1.0 |
| KPEAFPPP_21 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_22 | 1.0 | 0.0 | 1.0 |
| KPEAFPPP_23 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_24 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_25 | 1.0 | 0.0 | 1.0 |
| KPEAFPPP_26 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_27 | 1.0 | 0.0 | 1.0 |
| KPEAFPPP_28 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_29 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_31 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_32 | 1.0 | 0.0 | 1.0 |
| KPEAFPPP_33 | 1.0 | 0.0 | 1.0 |
| KPEAFPPP_34 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_35 | 1.0 | 0.0 | 1.0 |
| KPEAFPPP_36 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_37 | 1.0 | 0.0 | 1.0 |
| KPEAFPPP_39 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_40 | 1.0 | 0.0 | 1.0 |
| KPEAFPPP_41 | 1.0 | 0.0 | 1.0 |
| KPEAFPPP_42 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_43 | 1.0 | 0.0 | 1.0 |
| KPEAFPPP_45 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_54 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_55 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_56 | 0.0 | 1.0 | 0.0 |
| KPEAFPPP_57 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KPEAFPPP_12 | 615557 | 631136 | True | Myoviridae | VOG0275, |
Phigaro v2.4.0 (Database: Jan. 2024 release)