Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GIGPGPPK_64 | 25868 | 26707 | ErmF | ARO:3000498 | ErmF | 98.50 | 104.89 | M17124.1 |
| GIGPGPPK_64 | 23656 | 25581 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GIGPGPPK_64 | 25868 | 26668 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| GIGPGPPK_64 | 23656 | 25581 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.45 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GIGPGPPK_64 | 25871 | 26668 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| GIGPGPPK_64 | 23659 | 25581 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GIGPGPPK_1 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_2 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_13 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_24 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_25 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_26 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_27 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_28 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_29 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_30 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_31 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_32 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_33 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_34 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_35 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_36 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_37 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_38 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_39 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_40 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_41 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_42 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_43 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_44 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_45 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_46 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_47 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_48 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_49 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_50 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_51 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_52 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_53 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_54 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_55 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_56 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_57 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_58 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_59 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_60 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_61 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_62 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_63 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_64 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_65 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_66 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_67 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_68 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_69 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_70 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_71 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_72 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_73 | 1.0 | 0.0 | 1.0 |
| GIGPGPPK_74 | 1.0 | 0.0 | 1.0 |
| GIGPGPPK_75 | 1.0 | 0.0 | 1.0 |
| GIGPGPPK_76 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_77 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_78 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_79 | 1.0 | 0.0 | 1.0 |
| GIGPGPPK_80 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_81 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_83 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_84 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_85 | 1.0 | 0.0 | 1.0 |
| GIGPGPPK_86 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_87 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_88 | 1.0 | 0.0 | 1.0 |
| GIGPGPPK_90 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_91 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_92 | 1.0 | 0.0 | 1.0 |
| GIGPGPPK_93 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_94 | 1.0 | 0.0 | 1.0 |
| GIGPGPPK_95 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_96 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_98 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_99 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_100 | 1.0 | 0.0 | 1.0 |
| GIGPGPPK_101 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_102 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_103 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_104 | 1.0 | 0.0 | 1.0 |
| GIGPGPPK_105 | 1.0 | 0.0 | 1.0 |
| GIGPGPPK_106 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_107 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_108 | 1.0 | 0.0 | 1.0 |
| GIGPGPPK_109 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_110 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_112 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_113 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_114 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_116 | 1.0 | 0.0 | 1.0 |
| GIGPGPPK_117 | 0.0 | 1.0 | 0.0 |
| GIGPGPPK_118 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GIGPGPPK_109 | 174264 | 181633 | False | Siphoviridae | VOG4581, |
Phigaro v2.4.0 (Database: Jan. 2024 release)