Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LNJANMJE_77 | 18068 | 18901 | ErmF | ARO:3000498 | ErmF | 98.50 | 104.14 | M17124.1 |
| LNJANMJE_77 | 15856 | 17781 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LNJANMJE_77 | 18068 | 18868 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| LNJANMJE_77 | 15856 | 17781 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.45 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LNJANMJE_77 | 18071 | 18868 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| LNJANMJE_77 | 15859 | 17781 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LNJANMJE_1 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_2 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_3 | 1.0 | 0.0 | 1.0 |
| LNJANMJE_4 | 1.0 | 0.0 | 1.0 |
| LNJANMJE_13 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_23 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_24 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_25 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_26 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_27 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_28 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_29 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_30 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_31 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_32 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_33 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_34 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_35 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_36 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_37 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_38 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_39 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_40 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_41 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_42 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_43 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_44 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_45 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_46 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_47 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_48 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_49 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_50 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_51 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_52 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_53 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_54 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_55 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_56 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_57 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_58 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_59 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_60 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_61 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_62 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_63 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_64 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_65 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_66 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_67 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_68 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_69 | 1.0 | 0.0 | 1.0 |
| LNJANMJE_70 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_71 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_72 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_73 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_74 | 1.0 | 0.0 | 1.0 |
| LNJANMJE_75 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_76 | 1.0 | 0.0 | 1.0 |
| LNJANMJE_77 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_78 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_79 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_80 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_81 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_82 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_83 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_84 | 1.0 | 0.0 | 1.0 |
| LNJANMJE_85 | 1.0 | 0.0 | 1.0 |
| LNJANMJE_86 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_87 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_88 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_89 | 1.0 | 0.0 | 1.0 |
| LNJANMJE_90 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_91 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_92 | 1.0 | 0.0 | 1.0 |
| LNJANMJE_93 | 1.0 | 0.0 | 1.0 |
| LNJANMJE_94 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_95 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_96 | 1.0 | 0.0 | 1.0 |
| LNJANMJE_97 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_98 | 1.0 | 0.0 | 1.0 |
| LNJANMJE_99 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_100 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_101 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_102 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_103 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_104 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_105 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_106 | 1.0 | 0.0 | 1.0 |
| LNJANMJE_107 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_108 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_109 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_110 | 1.0 | 0.0 | 1.0 |
| LNJANMJE_111 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_112 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_114 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_115 | 1.0 | 0.0 | 1.0 |
| LNJANMJE_116 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_117 | 0.0 | 1.0 | 0.0 |
| LNJANMJE_118 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LNJANMJE_75 | 194706 | 202075 | False | Siphoviridae | VOG4581, |
Phigaro v2.4.0 (Database: Jan. 2024 release)