Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HIGDBMJJ_25 | 82146 | 84071 | tet(Q) | ARO:3000191 | tet(Q) | 89.24 | 97.56 | Z21523.1 |
| HIGDBMJJ_45 | 2513 | 4459 | tet(Q) | ARO:3000191 | tet(Q) | 97.81 | 98.63 | Z21523.1 |
| HIGDBMJJ_55 | 2009 | 2809 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| HIGDBMJJ_55 | 630 | 1796 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 100.00 | M37699.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HIGDBMJJ_55 | 2009 | 2809 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| HIGDBMJJ_55 | 630 | 1796 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| HIGDBMJJ_45 | 2513 | 4425 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.75 | 99.33 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HIGDBMJJ_55 | 2012 | 2809 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| HIGDBMJJ_55 | 630 | 1793 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| HIGDBMJJ_45 | 2513 | 4426 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.96 | 99.53 | WP_063856407.1 |
| HIGDBMJJ_25 | 82146 | 84068 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.70 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HIGDBMJJ_1 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_2 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_3 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_4 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_5 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_6 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_7 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_8 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_9 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_10 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_11 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_12 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_13 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_14 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_15 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_16 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_17 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_18 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_19 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_20 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_21 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_22 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_23 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_24 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_25 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_26 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_27 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_28 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_29 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_30 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_31 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_32 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_33 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_34 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_35 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_36 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_37 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_38 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_39 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_40 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_41 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_42 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_43 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_44 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_45 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_46 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_47 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_48 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_49 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_50 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_51 | 1.0 | 0.0 | 1.0 |
| HIGDBMJJ_52 | 1.0 | 0.0 | 1.0 |
| HIGDBMJJ_53 | 1.0 | 0.0 | 1.0 |
| HIGDBMJJ_54 | 1.0 | 0.0 | 1.0 |
| HIGDBMJJ_55 | 1.0 | 0.0 | 1.0 |
| HIGDBMJJ_56 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_57 | 1.0 | 0.0 | 1.0 |
| HIGDBMJJ_58 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_59 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_60 | 1.0 | 0.0 | 1.0 |
| HIGDBMJJ_61 | 1.0 | 0.0 | 1.0 |
| HIGDBMJJ_62 | 1.0 | 0.0 | 1.0 |
| HIGDBMJJ_63 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_64 | 1.0 | 0.0 | 1.0 |
| HIGDBMJJ_65 | 1.0 | 0.0 | 1.0 |
| HIGDBMJJ_66 | 1.0 | 0.0 | 1.0 |
| HIGDBMJJ_67 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_68 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_69 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_70 | 1.0 | 0.0 | 1.0 |
| HIGDBMJJ_71 | 1.0 | 0.0 | 1.0 |
| HIGDBMJJ_72 | 1.0 | 0.0 | 1.0 |
| HIGDBMJJ_73 | 1.0 | 0.0 | 1.0 |
| HIGDBMJJ_74 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_75 | 1.0 | 0.0 | 1.0 |
| HIGDBMJJ_76 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_77 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_78 | 0.0 | 1.0 | 0.0 |
| HIGDBMJJ_79 | 1.0 | 0.0 | 1.0 |
| HIGDBMJJ_80 | 1.0 | 0.0 | 1.0 |
| HIGDBMJJ_81 | 1.0 | 0.0 | 1.0 |
| HIGDBMJJ_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HIGDBMJJ_7 | 48661 | 53141 | False | Unknown | VOG0189, |
| HIGDBMJJ_7 | 86087 | 103013 | False | Siphoviridae | VOG0352, |
Phigaro v2.4.0 (Database: Jan. 2024 release)