Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LJFCJMGI_2 | 87361 | 88290 | Erm(52) | ARO:3007041 | Erm(52) | 100.00 | 100.00 | MW269959.1 |
| LJFCJMGI_18 | 18205 | 18942 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
| LJFCJMGI_56 | 4773 | 6692 | tet(W) | ARO:3000194 | tet(W) | 99.06 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LJFCJMGI_18 | 18205 | 18942 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | AF299292 |
| LJFCJMGI_56 | 4773 | 6692 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.58 | 100.00 | AJ427422 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LJFCJMGI_2 | 87361 | 88287 | erm(52) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(52) | EXACTX | 100.00 | 100.00 | WP_002571018.1 |
| LJFCJMGI_18 | 18208 | 18942 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.59 | 100.00 | WP_001038792.1 |
| LJFCJMGI_56 | 4776 | 6692 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.37 | 100.00 | WP_063856423.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LJFCJMGI_1 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_2 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_3 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_4 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_5 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_6 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_7 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_8 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_9 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_10 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_11 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_12 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_13 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_14 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_15 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_16 | 1.0 | 0.0 | 1.0 |
| LJFCJMGI_17 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_18 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_19 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_20 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_21 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_22 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_23 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_24 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_25 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_26 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_27 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_28 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_29 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_30 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_31 | 1.0 | 0.0 | 1.0 |
| LJFCJMGI_32 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_33 | 1.0 | 0.0 | 1.0 |
| LJFCJMGI_34 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_35 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_36 | 1.0 | 0.0 | 1.0 |
| LJFCJMGI_37 | 1.0 | 0.0 | 1.0 |
| LJFCJMGI_38 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_39 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_41 | 1.0 | 0.0 | 1.0 |
| LJFCJMGI_42 | 1.0 | 0.0 | 1.0 |
| LJFCJMGI_43 | 1.0 | 0.0 | 1.0 |
| LJFCJMGI_44 | 1.0 | 0.0 | 1.0 |
| LJFCJMGI_45 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_46 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_48 | 1.0 | 0.0 | 1.0 |
| LJFCJMGI_49 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_50 | 1.0 | 0.0 | 1.0 |
| LJFCJMGI_51 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_52 | 1.0 | 0.0 | 1.0 |
| LJFCJMGI_53 | 1.0 | 0.0 | 1.0 |
| LJFCJMGI_54 | 1.0 | 0.0 | 1.0 |
| LJFCJMGI_55 | 1.0 | 0.0 | 1.0 |
| LJFCJMGI_56 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_57 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_67 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_73 | 0.0 | 1.0 | 0.0 |
| LJFCJMGI_74 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LJFCJMGI_6 | 52734 | 85021 | True | Siphoviridae | VOG0377, |
| LJFCJMGI_8 | 5376 | 10344 | False | Siphoviridae | VOG3453, |
| LJFCJMGI_9 | 26284 | 43380 | False | Siphoviridae | VOG5332, |
| LJFCJMGI_56 | 107586 | 118548 | False | Myoviridae | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)