safety

PPRS ARGs VFs PGs Plasmid Prophage IS elements

ARGs	VFs	PGs	PPRS
4	0	1	4.12

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Comprehensive Antibiotic Resistance Database (CARD)

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
DGGKCEGJ_1	251913	253838	tet(Q)	ARO:3000191	tet(Q)	96.41	97.56	Z21523.1
DGGKCEGJ_3	127564	128364	ErmF	ARO:3000498	ErmF	98.50	100.00	M17124.1

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
DGGKCEGJ_1	251913	253838	tet(Q)	Doxycycline, Tetracycline, Minocycline	99.84	100.00	L33696
DGGKCEGJ_3	127564	128364	erm(F)	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	99.50	100.00	M17808
DGGKCEGJ_2	139594	140811	mef(A)	Erythromycin, Azithromycin	95.24	100.00	AF227520

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
DGGKCEGJ_43	135746	136651	blaMUN-1	MUN family extended-spectrum class A beta-lactamase MUN-1	ALLELEX	100.00	100.00	WP_206340447.1
DGGKCEGJ_1	251913	253835	tet(Q)	tetracycline resistance ribosomal protection protein Tet(Q)	BLASTX	99.53	100.00	WP_063856407.1
DGGKCEGJ_2	139597	140811	mef(A)	macrolide efflux MFS transporter Mef(A)	BLASTX	99.01	99.26	WP_012102963.1
DGGKCEGJ_3	127564	128361	erm(F)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F)	BLASTX	98.87	100.00	WP_002682030.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
DGGKCEGJ_44	170746	169166	GroEL	0.0	folding of newly synthesized proteins, preventing misfolding and aggregation	80.64	96.70	BAA04222

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

PlasmidFinder

Query ID	Begin	End	Plasmid	Query / Template	Identity	Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID	Prediction	Chromosome	Plasmid
DGGKCEGJ_1	0.0	1.0	0.0
DGGKCEGJ_2	0.0	1.0	0.0
DGGKCEGJ_3	0.0	1.0	0.0
DGGKCEGJ_4	0.0	1.0	0.0
DGGKCEGJ_5	0.0	1.0	0.0
DGGKCEGJ_6	0.0	1.0	0.0
DGGKCEGJ_7	0.0	1.0	0.0
DGGKCEGJ_8	0.0	1.0	0.0
DGGKCEGJ_9	0.0	1.0	0.0
DGGKCEGJ_10	0.0	1.0	0.0
DGGKCEGJ_11	0.0	1.0	0.0
DGGKCEGJ_12	0.0	1.0	0.0
DGGKCEGJ_13	0.0	1.0	0.0
DGGKCEGJ_14	0.0	1.0	0.0
DGGKCEGJ_15	0.0	1.0	0.0
DGGKCEGJ_16	0.0	1.0	0.0
DGGKCEGJ_17	0.0	1.0	0.0
DGGKCEGJ_18	0.0	1.0	0.0
DGGKCEGJ_19	0.0	1.0	0.0
DGGKCEGJ_20	0.0	1.0	0.0
DGGKCEGJ_21	1.0	0.0	1.0
DGGKCEGJ_22	1.0	0.0	1.0
DGGKCEGJ_23	0.0	1.0	0.0
DGGKCEGJ_24	1.0	0.0	1.0
DGGKCEGJ_25	0.0	1.0	0.0
DGGKCEGJ_26	1.0	0.0	1.0
DGGKCEGJ_27	0.0	1.0	0.0
DGGKCEGJ_28	1.0	0.0	1.0
DGGKCEGJ_29	1.0	0.0	1.0
DGGKCEGJ_30	1.0	0.0	1.0
DGGKCEGJ_31	0.0	1.0	0.0
DGGKCEGJ_32	1.0	0.0	1.0
DGGKCEGJ_33	1.0	0.0	1.0
DGGKCEGJ_34	0.0	1.0	0.0
DGGKCEGJ_35	1.0	0.0	1.0
DGGKCEGJ_36	1.0	0.0	1.0
DGGKCEGJ_42	0.0	1.0	0.0
DGGKCEGJ_43	0.0	1.0	0.0
DGGKCEGJ_44	0.0	1.0	0.0
DGGKCEGJ_45	0.0	1.0	0.0
DGGKCEGJ_46	0.0	1.0	0.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Phigaro

Query ID	Begin	End	Transposable	Taxonomy	pVOGs
No hit found

Phigaro v2.4.0 (Database: Jan. 2024 release)