Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DJFFLGIB_29 | 15388 | 16233 | ErmF | ARO:3000498 | ErmF | 98.50 | 105.64 | M17124.1 |
| DJFFLGIB_29 | 13176 | 15101 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DJFFLGIB_29 | 15388 | 16188 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| DJFFLGIB_29 | 13176 | 15101 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.45 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DJFFLGIB_29 | 15391 | 16188 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| DJFFLGIB_29 | 13179 | 15101 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DJFFLGIB_23 | 178280 | 179860 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DJFFLGIB_1 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_2 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_3 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_4 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_5 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_6 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_7 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_8 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_9 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_10 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_11 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_12 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_13 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_14 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_15 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_16 | 1.0 | 0.0 | 1.0 |
| DJFFLGIB_17 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_18 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_19 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_20 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_21 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_22 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_23 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_24 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_25 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_26 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_27 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_28 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_29 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_30 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_31 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_32 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_33 | 1.0 | 0.0 | 1.0 |
| DJFFLGIB_34 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_35 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_36 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_37 | 1.0 | 0.0 | 1.0 |
| DJFFLGIB_38 | 1.0 | 0.0 | 1.0 |
| DJFFLGIB_39 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_40 | 1.0 | 0.0 | 1.0 |
| DJFFLGIB_42 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_43 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_44 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_45 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_46 | 1.0 | 0.0 | 1.0 |
| DJFFLGIB_47 | 1.0 | 0.0 | 1.0 |
| DJFFLGIB_48 | 1.0 | 0.0 | 1.0 |
| DJFFLGIB_49 | 1.0 | 0.0 | 1.0 |
| DJFFLGIB_50 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_51 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_52 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_53 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_54 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_55 | 1.0 | 0.0 | 1.0 |
| DJFFLGIB_56 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_57 | 1.0 | 0.0 | 1.0 |
| DJFFLGIB_58 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_59 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_60 | 1.0 | 0.0 | 1.0 |
| DJFFLGIB_61 | 1.0 | 0.0 | 1.0 |
| DJFFLGIB_67 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_78 | 0.0 | 1.0 | 0.0 |
| DJFFLGIB_80 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DJFFLGIB_12 | 290092 | 306430 | True | Unknown | VOG4552, |
Phigaro v2.4.0 (Database: Jan. 2024 release)