Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DAJMCPLM_63 | 12912 | 14885 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
| DAJMCPLM_120 | 1049 | 1873 | OXA-347 | ARO:3001777 | OXA-347 | 100.00 | 100.00 | JN086160.1 |
| DAJMCPLM_119 | 47 | 862 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
| DAJMCPLM_120 | 1 | 846 | ErmF | ARO:3000498 | ErmF | 98.50 | 105.64 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DAJMCPLM_120 | 1049 | 1873 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 100.00 | ACWG01000053 |
| DAJMCPLM_119 | 47 | 862 | sul2 | Sulfamethoxazole | 100.00 | 100.00 | AY034138 |
| DAJMCPLM_63 | 12960 | 14885 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| DAJMCPLM_120 | 46 | 846 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DAJMCPLM_120 | 1052 | 1873 | blaOXA-347 | class D beta-lactamase OXA-347 | ALLELEX | 100.00 | 100.00 | WP_004295324.1 |
| DAJMCPLM_119 | 50 | 862 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| DAJMCPLM_63 | 12960 | 14882 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| DAJMCPLM_120 | 46 | 843 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DAJMCPLM_1 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_2 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_3 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_4 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_5 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_6 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_7 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_8 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_9 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_10 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_11 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_12 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_13 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_15 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_16 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_17 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_24 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_30 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_31 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_32 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_33 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_34 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_35 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_36 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_37 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_38 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_39 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_40 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_41 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_42 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_43 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_44 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_45 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_46 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_47 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_48 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_49 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_50 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_51 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_52 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_53 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_54 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_55 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_56 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_57 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_58 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_59 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_60 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_61 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_62 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_63 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_64 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_65 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_66 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_67 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_68 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_69 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_70 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_71 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_72 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_73 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_74 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_75 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_76 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_77 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_78 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_79 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_80 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_81 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_82 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_83 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_84 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_85 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_86 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_87 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_88 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_89 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_90 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_91 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_92 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_93 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_94 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_95 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_96 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_97 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_98 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_100 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_101 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_102 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_103 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_104 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_105 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_106 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_107 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_108 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_109 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_110 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_111 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_112 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_113 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_114 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_116 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_117 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_118 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_119 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_120 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_121 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_122 | 1.0 | 0.0 | 1.0 |
| DAJMCPLM_123 | 0.0 | 1.0 | 0.0 |
| DAJMCPLM_124 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DAJMCPLM_36 | 61918 | 69409 | False | Siphoviridae | VOG9606, |
| DAJMCPLM_81 | 140670 | 161044 | True | Myoviridae | VOG0275, |
Phigaro v2.4.0 (Database: Jan. 2024 release)