Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LNNCGPNK_51 | 12076 | 12813 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
| LNNCGPNK_59 | 3305 | 3799 | dfrF | ARO:3002867 | dfrF | 100.00 | 100.00 | AF028812.1 |
| LNNCGPNK_9 | 2472 | 3692 | tet(40) | ARO:3000567 | tet(40) | 99.01 | 100.00 | AM419751.1 |
| LNNCGPNK_9 | 502 | 2421 | tet(O) | ARO:3000190 | tet(O) | 93.74 | 100.00 | M18896.2 |
| LNNCGPNK_65 | 109 | 1548 | AAC(6')-Ie-APH(2'')-Ia bifunctional protein | ARO:3002597 | AAC6_Ie_APH2_Ia | 100.00 | 100.00 | GU565967.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LNNCGPNK_65 | 109 | 1548 | aac(6')-aph(2'') | Gentamicin, Tobramycin, Netilmicin, Kanamycin, Amikacin, Dibekacin, Isepamicin, Fortimicin, Streptomycin | 100.00 | 100.00 | M13771 |
| LNNCGPNK_51 | 12076 | 12813 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | U86375 |
| LNNCGPNK_9 | 2472 | 3692 | tet(40) | Doxycycline, Tetracycline | 99.92 | 100.00 | FJ158002 |
| LNNCGPNK_9 | 502 | 2421 | tet(O/32/O) | Doxycycline, Tetracycline, Minocycline | 99.79 | 100.00 | AIOQ01000025 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LNNCGPNK_65 | 112 | 1548 | aac(6')-Ie/aph(2'')-Ia | bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia | EXACTX | 100.00 | 100.00 | WP_001028144.1 |
| LNNCGPNK_59 | 3308 | 3799 | dfrF | trimethoprim-resistant dihydrofolate reductase DfrF | EXACTX | 100.00 | 100.00 | WP_002322211.1 |
| LNNCGPNK_51 | 12076 | 12810 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_001038790.1 |
| LNNCGPNK_9 | 2472 | 3689 | tet(40) | tetracycline efflux MFS transporter Tet(40) | BLASTX | 99.75 | 100.00 | WP_024407615.1 |
| LNNCGPNK_9 | 502 | 2418 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 94.05 | 100.00 | WP_012669445.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LNNCGPNK_51 | 13809 | 15299 | rep1 | 1491 / 1491 | 100.00 | AE016833 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LNNCGPNK_1 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_2 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_3 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_4 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_5 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_6 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_7 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_8 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_9 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_10 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_11 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_12 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_13 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_14 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_15 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_16 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_17 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_18 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_19 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_20 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_21 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_22 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_23 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_24 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_25 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_26 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_27 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_28 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_29 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_30 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_31 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_32 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_33 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_34 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_35 | 1.0 | 0.0 | 1.0 |
| LNNCGPNK_36 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_37 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_38 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_39 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_40 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_41 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_42 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_43 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_44 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_45 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_46 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_47 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_48 | 1.0 | 0.0 | 1.0 |
| LNNCGPNK_49 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_50 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_51 | 1.0 | 0.0 | 1.0 |
| LNNCGPNK_52 | 1.0 | 0.0 | 1.0 |
| LNNCGPNK_53 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_54 | 1.0 | 0.0 | 1.0 |
| LNNCGPNK_55 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_56 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_57 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_58 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_59 | 1.0 | 0.0 | 1.0 |
| LNNCGPNK_60 | 1.0 | 0.0 | 1.0 |
| LNNCGPNK_61 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_62 | 1.0 | 0.0 | 1.0 |
| LNNCGPNK_63 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_64 | 1.0 | 0.0 | 1.0 |
| LNNCGPNK_65 | 1.0 | 0.0 | 1.0 |
| LNNCGPNK_66 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_67 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_68 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_69 | 1.0 | 0.0 | 1.0 |
| LNNCGPNK_70 | 1.0 | 0.0 | 1.0 |
| LNNCGPNK_71 | 1.0 | 0.0 | 1.0 |
| LNNCGPNK_72 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_73 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_74 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_75 | 1.0 | 0.0 | 1.0 |
| LNNCGPNK_76 | 1.0 | 0.0 | 1.0 |
| LNNCGPNK_77 | 1.0 | 0.0 | 1.0 |
| LNNCGPNK_78 | 0.0 | 1.0 | 0.0 |
| LNNCGPNK_80 | 1.0 | 0.0 | 1.0 |
| LNNCGPNK_82 | 1.0 | 0.0 | 1.0 |
| LNNCGPNK_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LNNCGPNK_5 | 18272 | 33298 | False | Siphoviridae | VOG5774, |
| LNNCGPNK_13 | 17310 | 29873 | False | Siphoviridae | VOG1931, |
Phigaro v2.4.0 (Database: Jan. 2024 release)