Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GFLLCFAI_23 | 1466 | 3385 | tet(W) | ARO:3000194 | tet(W) | 98.90 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GFLLCFAI_23 | 1466 | 3385 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.27 | 100.00 | AJ427422 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GFLLCFAI_23 | 1466 | 3382 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_063856423.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GFLLCFAI_1 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_2 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_3 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_4 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_5 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_6 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_7 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_8 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_9 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_10 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_11 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_12 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_13 | 1.0 | 0.0 | 1.0 |
| GFLLCFAI_14 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_16 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_17 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_18 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_19 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_20 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_21 | 1.0 | 0.0 | 1.0 |
| GFLLCFAI_22 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_23 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_24 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_27 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_28 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_29 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_30 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_31 | 0.0 | 1.0 | 0.0 |
| GFLLCFAI_32 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GFLLCFAI_1 | 363047 | 383129 | False | Myoviridae | VOG0574, |
| GFLLCFAI_4 | 20297 | 28519 | False | Myoviridae | VOG3622, |
| GFLLCFAI_4 | 37730 | 67268 | False | Myoviridae | VOG4618, |
| GFLLCFAI_27 | 146894 | 162332 | False | Unknown | VOG4548, |
Phigaro v2.4.0 (Database: Jan. 2024 release)