Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HENAACCJ_87 | 13782 | 15756 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| HENAACCJ_119 | 1190 | 1990 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HENAACCJ_87 | 13782 | 15707 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| HENAACCJ_119 | 1190 | 1990 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HENAACCJ_87 | 13785 | 15707 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| HENAACCJ_119 | 1190 | 1987 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HENAACCJ_112 | 2186 | 2766 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HENAACCJ_1 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_2 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_3 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_4 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_5 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_6 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_7 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_8 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_13 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_24 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_30 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_31 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_32 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_33 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_34 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_35 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_36 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_37 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_38 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_39 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_40 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_41 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_42 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_43 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_44 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_45 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_46 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_47 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_48 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_49 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_50 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_51 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_52 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_53 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_54 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_55 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_56 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_57 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_58 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_59 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_60 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_61 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_62 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_63 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_64 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_65 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_66 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_67 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_68 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_69 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_70 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_71 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_72 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_73 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_74 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_75 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_76 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_77 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_78 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_79 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_80 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_81 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_82 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_83 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_84 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_85 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_86 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_87 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_88 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_89 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_90 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_91 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_92 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_93 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_94 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_95 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_96 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_97 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_98 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_99 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_100 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_101 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_102 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_103 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_104 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_105 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_107 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_108 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_109 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_110 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_111 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_112 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_113 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_114 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_115 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_116 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_117 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_118 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_119 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_120 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_121 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_122 | 1.0 | 0.0 | 1.0 |
| HENAACCJ_123 | 0.0 | 1.0 | 0.0 |
| HENAACCJ_124 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HENAACCJ_24 | 118028 | 126907 | False | Siphoviridae | VOG0275, |
| HENAACCJ_37 | 361331 | 373680 | False | Unknown | VOG0083, |
| HENAACCJ_66 | 19972 | 28744 | False | Siphoviridae | VOG4652, |
| HENAACCJ_70 | 58796 | 67527 | False | Siphoviridae | VOG7238, |
| HENAACCJ_72 | 4834 | 17059 | False | Unknown | VOG5096, |
Phigaro v2.4.0 (Database: Jan. 2024 release)