Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CEEAFCNO_23 | 17499 | 18314 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
| CEEAFCNO_31 | 5006 | 5806 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| CEEAFCNO_5 | 114 | 1004 | CblA-1 | ARO:3002999 | CblA-1 | 96.28 | 100.00 | GQ343019.1 |
| CEEAFCNO_26 | 2 | 1951 | tet(Q) | ARO:3000191 | tet(Q) | 99.85 | 98.93 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CEEAFCNO_23 | 17499 | 18314 | sul2 | Sulfamethoxazole | 100.00 | 100.00 | AY034138 |
| CEEAFCNO_26 | 1 | 1903 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 98.81 | Z21523 |
| CEEAFCNO_31 | 5006 | 5806 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CEEAFCNO_23 | 17502 | 18314 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| CEEAFCNO_26 | 2 | 1903 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 100.00 | 98.91 | WP_002560998.1 |
| CEEAFCNO_31 | 5009 | 5806 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| CEEAFCNO_5 | 114 | 1001 | cblA | CblA family class A beta-lactamase | BLASTX | 96.28 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CEEAFCNO_1 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_2 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_3 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_4 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_5 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_6 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_7 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_8 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_9 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_10 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_11 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_12 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_13 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_14 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_15 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_16 | 1.0 | 0.0 | 1.0 |
| CEEAFCNO_17 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_18 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_19 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_20 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_21 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_22 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_23 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_24 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_25 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_26 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_27 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_28 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_29 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_30 | 1.0 | 0.0 | 1.0 |
| CEEAFCNO_31 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_32 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_33 | 1.0 | 0.0 | 1.0 |
| CEEAFCNO_34 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_35 | 1.0 | 0.0 | 1.0 |
| CEEAFCNO_36 | 1.0 | 0.0 | 1.0 |
| CEEAFCNO_37 | 1.0 | 0.0 | 1.0 |
| CEEAFCNO_38 | 1.0 | 0.0 | 1.0 |
| CEEAFCNO_39 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_41 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_42 | 1.0 | 0.0 | 1.0 |
| CEEAFCNO_43 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_44 | 1.0 | 0.0 | 1.0 |
| CEEAFCNO_45 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_53 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_54 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_55 | 0.0 | 1.0 | 0.0 |
| CEEAFCNO_56 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CEEAFCNO_6 | 58709 | 66952 | False | Unknown | VOG0025, |
| CEEAFCNO_9 | 71183 | 76381 | True | Unknown | VOG4609, |
| CEEAFCNO_16 | 18957 | 29435 | False | Unknown | VOG8506, |
| CEEAFCNO_17 | 16580 | 28407 | False | Siphoviridae | VOG7268, |
| CEEAFCNO_24 | 16586 | 24958 | True | Myoviridae | / |
Phigaro v2.4.0 (Database: Jan. 2024 release)