Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EKCLBKFJ_15 | 29251 | 30051 | ErmF | ARO:3000498 | ErmF | 99.25 | 100.00 | M17124.1 |
| EKCLBKFJ_29 | 3 | 1271 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 64.23 | Z21523.1 |
| EKCLBKFJ_45 | 3 | 1292 | tet(Q) | ARO:3000191 | tet(Q) | 95.47 | 65.30 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EKCLBKFJ_15 | 29251 | 30051 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M17808 |
| EKCLBKFJ_29 | 1 | 1307 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.46 | 66.51 | U73497 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EKCLBKFJ_15 | 29254 | 30051 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_002682030.1 |
| EKCLBKFJ_29 | 3 | 1268 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 100.00 | 65.83 | WP_002560998.1 |
| EKCLBKFJ_45 | 3 | 1259 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 98.33 | 65.37 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EKCLBKFJ_33 | 1837 | 257 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.72 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EKCLBKFJ_1 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_2 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_8 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_9 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_10 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_11 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_12 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_13 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_14 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_15 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_16 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_17 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_18 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_19 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_20 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_21 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_22 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_23 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_24 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_25 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_26 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_27 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_28 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_29 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_30 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_31 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_32 | 1.0 | 0.0 | 1.0 |
| EKCLBKFJ_33 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_34 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_35 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_36 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_37 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_38 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_39 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_40 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_41 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_42 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_43 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_44 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_45 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_46 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_47 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_48 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_49 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_50 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_51 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_52 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_53 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_54 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_55 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_56 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_57 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_58 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_59 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_60 | 1.0 | 0.0 | 1.0 |
| EKCLBKFJ_61 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_62 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_63 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_64 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_65 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_66 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_67 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_68 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_69 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_70 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_71 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_72 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_73 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_74 | 1.0 | 0.0 | 1.0 |
| EKCLBKFJ_75 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_76 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_77 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_78 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_79 | 1.0 | 0.0 | 1.0 |
| EKCLBKFJ_80 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_81 | 1.0 | 0.0 | 1.0 |
| EKCLBKFJ_82 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_83 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_84 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_85 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_86 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_87 | 1.0 | 0.0 | 1.0 |
| EKCLBKFJ_88 | 1.0 | 0.0 | 1.0 |
| EKCLBKFJ_89 | 1.0 | 0.0 | 1.0 |
| EKCLBKFJ_90 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_91 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_92 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_93 | 1.0 | 0.0 | 1.0 |
| EKCLBKFJ_94 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_95 | 1.0 | 0.0 | 1.0 |
| EKCLBKFJ_96 | 0.0 | 1.0 | 0.0 |
| EKCLBKFJ_97 | 1.0 | 0.0 | 1.0 |
| EKCLBKFJ_98 | 1.0 | 0.0 | 1.0 |
| EKCLBKFJ_99 | 1.0 | 0.0 | 1.0 |
| EKCLBKFJ_100 | 1.0 | 0.0 | 1.0 |
| EKCLBKFJ_101 | 1.0 | 0.0 | 1.0 |
| EKCLBKFJ_102 | 1.0 | 0.0 | 1.0 |
| EKCLBKFJ_103 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EKCLBKFJ_25 | 14600 | 18536 | False | Unknown | VOG4609, |
| EKCLBKFJ_37 | 28708 | 31142 | True | Unknown | VOG6282, |
Phigaro v2.4.0 (Database: Jan. 2024 release)