Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HBMFDBGA_9 | 91512 | 92308 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 91.47 | 99.50 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HBMFDBGA_9 | 91512 | 92309 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 89.85 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HBMFDBGA_1 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_2 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_3 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_4 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_5 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_6 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_7 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_8 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_9 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_10 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_11 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_12 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_13 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_14 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_15 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_16 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_17 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_18 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_19 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_20 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_21 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_22 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_23 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_24 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_25 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_26 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_27 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_28 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_29 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_30 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_31 | 1.0 | 0.0 | 1.0 |
| HBMFDBGA_32 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_33 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_34 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_35 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_36 | 1.0 | 0.0 | 1.0 |
| HBMFDBGA_37 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_38 | 1.0 | 0.0 | 1.0 |
| HBMFDBGA_39 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_40 | 1.0 | 0.0 | 1.0 |
| HBMFDBGA_42 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_43 | 1.0 | 0.0 | 1.0 |
| HBMFDBGA_44 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_45 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_46 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_47 | 1.0 | 0.0 | 1.0 |
| HBMFDBGA_48 | 1.0 | 0.0 | 1.0 |
| HBMFDBGA_52 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_53 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_54 | 0.0 | 1.0 | 0.0 |
| HBMFDBGA_55 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HBMFDBGA_3 | 13235 | 24082 | False | Unknown | VOG3992, |
| HBMFDBGA_12 | 26569 | 38560 | False | Unknown | VOG0572, |
| HBMFDBGA_45 | 73290 | 90653 | False | Siphoviridae | VOG4841, |
| HBMFDBGA_45 | 123005 | 127485 | False | Unknown | VOG8584, |
| HBMFDBGA_52 | 152085 | 156547 | False | Siphoviridae | VOG4553, |
| HBMFDBGA_53 | 293148 | 299443 | False | Unknown | VOG9702, |
Phigaro v2.4.0 (Database: Jan. 2024 release)