Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JLDHPDKG_1 | 466548 | 468473 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| JLDHPDKG_38 | 231006 | 231896 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| JLDHPDKG_27 | 123 | 923 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JLDHPDKG_1 | 466548 | 468473 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| JLDHPDKG_27 | 123 | 923 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.25 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JLDHPDKG_38 | 231009 | 231896 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| JLDHPDKG_1 | 466548 | 468470 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| JLDHPDKG_27 | 126 | 923 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.12 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JLDHPDKG_1 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_2 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_3 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_4 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_5 | 1.0 | 0.0 | 1.0 |
| JLDHPDKG_6 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_7 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_8 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_9 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_10 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_11 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_12 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_13 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_14 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_15 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_16 | 1.0 | 0.0 | 1.0 |
| JLDHPDKG_17 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_18 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_19 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_20 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_21 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_22 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_23 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_24 | 1.0 | 0.0 | 1.0 |
| JLDHPDKG_25 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_26 | 1.0 | 0.0 | 1.0 |
| JLDHPDKG_27 | 1.0 | 0.0 | 1.0 |
| JLDHPDKG_28 | 1.0 | 0.0 | 1.0 |
| JLDHPDKG_29 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_30 | 1.0 | 0.0 | 1.0 |
| JLDHPDKG_31 | 1.0 | 0.0 | 1.0 |
| JLDHPDKG_32 | 1.0 | 0.0 | 1.0 |
| JLDHPDKG_34 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_38 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_39 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_40 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_41 | 0.0 | 1.0 | 0.0 |
| JLDHPDKG_42 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JLDHPDKG_5 | 32887 | 46010 | False | Unknown | VOG0982, |
| JLDHPDKG_7 | 59460 | 69300 | True | Unknown | VOG0083, |
| JLDHPDKG_40 | 46257 | 50630 | True | Siphoviridae | VOG6282, |
Phigaro v2.4.0 (Database: Jan. 2024 release)