Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OHAAAAMI_19 | 91668 | 92873 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| OHAAAAMI_20 | 18949 | 20874 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OHAAAAMI_20 | 18949 | 20874 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OHAAAAMI_19 | 92898 | 93407 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| OHAAAAMI_20 | 18952 | 20874 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| OHAAAAMI_19 | 91668 | 92870 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OHAAAAMI_1 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_2 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_3 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_4 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_5 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_6 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_7 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_8 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_9 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_10 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_11 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_12 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_13 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_14 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_15 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_16 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_17 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_18 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_19 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_20 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_21 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_22 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_23 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_24 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_25 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_26 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_27 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_28 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_29 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_30 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_31 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_32 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_33 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_34 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_35 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_36 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_37 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_38 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_39 | 1.0 | 0.0 | 1.0 |
| OHAAAAMI_40 | 1.0 | 0.0 | 1.0 |
| OHAAAAMI_41 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_42 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_43 | 1.0 | 0.0 | 1.0 |
| OHAAAAMI_44 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_45 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_46 | 1.0 | 0.0 | 1.0 |
| OHAAAAMI_47 | 1.0 | 0.0 | 1.0 |
| OHAAAAMI_48 | 1.0 | 0.0 | 1.0 |
| OHAAAAMI_49 | 1.0 | 0.0 | 1.0 |
| OHAAAAMI_50 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_51 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_52 | 1.0 | 0.0 | 1.0 |
| OHAAAAMI_53 | 1.0 | 0.0 | 1.0 |
| OHAAAAMI_54 | 1.0 | 0.0 | 1.0 |
| OHAAAAMI_55 | 1.0 | 0.0 | 1.0 |
| OHAAAAMI_56 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_57 | 1.0 | 0.0 | 1.0 |
| OHAAAAMI_58 | 1.0 | 0.0 | 1.0 |
| OHAAAAMI_59 | 1.0 | 0.0 | 1.0 |
| OHAAAAMI_67 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_71 | 0.0 | 1.0 | 0.0 |
| OHAAAAMI_72 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OHAAAAMI_23 | 220225 | 228701 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)