Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AIFNGODF_33 | 209238 | 210374 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| AIFNGODF_45 | 40520 | 42307 | tet(Q) | ARO:3000191 | tet(Q) | 96.13 | 90.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AIFNGODF_33 | 209208 | 210374 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| AIFNGODF_45 | 40520 | 42307 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.83 | 92.83 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AIFNGODF_33 | 209208 | 210371 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| AIFNGODF_45 | 40523 | 42307 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.50 | 92.82 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AIFNGODF_14 | 12412 | 10832 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AIFNGODF_1 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_2 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_3 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_4 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_5 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_6 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_7 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_8 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_9 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_13 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_14 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_15 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_16 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_17 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_18 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_19 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_20 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_21 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_22 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_23 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_24 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_25 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_26 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_27 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_28 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_29 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_30 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_31 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_32 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_33 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_34 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_35 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_36 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_37 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_38 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_39 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_40 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_41 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_42 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_43 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_44 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_45 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_46 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_47 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_48 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_49 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_50 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_51 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_52 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_53 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_54 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_55 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_56 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_57 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_58 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_59 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_60 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_61 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_62 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_63 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_64 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_65 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_66 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_67 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_68 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_69 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_70 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_71 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_72 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_73 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_74 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_75 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_76 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_77 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_78 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_79 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_80 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_81 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_82 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_83 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_84 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_85 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_86 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_87 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_88 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_89 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_90 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_92 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_93 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_94 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_95 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_96 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_97 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_98 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_99 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_100 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_101 | 0.0 | 1.0 | 0.0 |
| AIFNGODF_102 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_103 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_104 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_105 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_106 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_107 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_108 | 1.0 | 0.0 | 1.0 |
| AIFNGODF_109 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AIFNGODF_24 | 53142 | 60848 | True | Unknown | VOG0275, |
| AIFNGODF_99 | 110493 | 115373 | True | Siphoviridae | VOG6282, |
Phigaro v2.4.0 (Database: Jan. 2024 release)